Detailed information of deep learning profile BP001071.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA3
Model ID: BP001071.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA1683.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55318  
Source: ENCSR092OVN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.00 0.00 -0.00 0.05 0.06 0.08 0.00 0.06 0.00 0.00 -0.00 0.00 ]
C [ 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.01 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.06 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 0.01 0.00 0.07 -0.00 -0.00 -0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4278 4106 4125 4225 3992 4301 4048 4128 3987 3942 3997 4082 4412 3922 3990 4592 4078 3795 3400 4332 3250 6204 7414 5742 1246 9 11450 14273 15121 1 14869 5501 5084 3833 4277 4353 3892 3863 4210 4149 4094 4077 4896 4882 4089 4039 4185 4052 4301 4643 ]
C [ 3711 3606 3295 3776 3767 3283 3321 3258 3296 3740 3665 3503 3289 3369 3396 3742 3316 3495 4247 4106 5307 1039 1642 152 18 20 3671 840 1 11170 8 2591 2785 3339 4253 3780 3045 3789 3428 3122 3099 3223 3167 3232 3013 3577 3237 3858 3362 3321 ]
G [ 3271 3433 3707 3301 3329 3422 3248 3522 3902 3177 3232 3378 3249 3592 3524 3205 3317 3259 3865 4188 2700 611 4461 2596 13701 1 3 3 5 1 35 3338 3932 5401 3495 3310 4055 3520 3500 3984 3944 4124 3211 3166 3931 3427 3426 3236 3815 3353 ]
T [ 3874 3989 4007 3832 4046 4128 4517 4226 3949 4275 4240 4171 4184 4251 4224 3595 4423 4585 3622 2508 3877 7280 1617 6644 169 15104 10 18 7 3962 222 3704 3333 2561 3109 3691 4142 3962 3996 3879 3997 3710 3860 3854 4101 4091 4286 3988 3656 3817 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.02 0.01 0.02 -0.03 0.07 0.06 0.08 -0.06 0.06 0.01 0.00 -0.00 0.00 ]
C [ 0.02 0.00 0.00 -0.00 -0.02 0.04 0.04 0.03 -0.04 0.08 -0.02 0.01 0.02 0.02 0.02 ]
G [ 0.01 -0.01 0.03 0.01 0.06 -0.04 -0.05 -0.04 -0.01 -0.03 -0.01 0.01 0.02 0.02 0.02 ]
T [ 0.00 0.02 -0.01 0.02 -0.01 0.07 -0.03 -0.02 -0.02 0.04 -0.02 0.00 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6076

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4748

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3397

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1944

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1830

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1681

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 881

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 735

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 97

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 23

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 20

CWM

PFM

     

HCWM

2 profiles found for the same TF (FOXA3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001072.1 FOXA3 ENCSR231ZVN K562 Homo sapiens MA1683.2
BP001073.1 FOXA3 ENCSR788DXU K562 Homo sapiens MA1683.2
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