JASPAR - ELK1 - BP001056.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for ELK1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ELK1
Model ID:	BP001056.1
Cell line/tissue:	GM12878
Class:	Tryptophan cluster factors
Family:	Ets-related
JASPAR ID:	UN0494.1
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P19419
Source:	ENCSR000DZB
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 5616

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.01	-0.00	0.00	-0.00	0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	0.02	0.00	0.00	0.05	0.06	0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.01	-0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	0.00	0.03	0.05	-0.00	0.00	0.00	-0.00	0.00	0.00	-0.00	]

Frequency matrix

A [	994	989	1035	981	1050	1055	971	997	928	949	1042	985	1053	1041	1159	1039	1121	830	587	775	3027	8	119	1	3	0	1	71	531	824	696	709	907	937	873	881	896	900	979	956	994	974	904	969	956	977	950	939	973	970	]
C [	1823	1899	1890	1904	1879	1848	1925	1901	1962	1954	1938	1880	1851	1859	1685	1947	2120	1703	2210	2782	500	4455	3	7	5611	5616	7	1076	2175	1813	1990	2212	1709	1663	1986	1850	1810	1876	1704	1797	1791	1852	1774	1741	1787	1805	1803	1794	1792	1750	]
G [	1731	1670	1681	1732	1686	1723	1789	1708	1710	1747	1594	1770	1732	1698	1834	1783	1497	2109	1542	1119	1674	508	7	6	1	0	4964	4094	1046	1488	1666	1766	1968	2024	1689	1817	1844	1756	1860	1781	1742	1718	1897	1839	1744	1811	1765	1811	1794	1827	]
T [	1068	1058	1010	999	1001	990	931	1010	1016	966	1042	981	980	1018	938	847	878	974	1277	940	415	645	5487	5602	1	0	644	375	1864	1491	1264	929	1032	992	1068	1068	1066	1084	1073	1082	1089	1072	1041	1067	1129	1023	1098	1072	1057	1069	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	0.01	-0.03	0.01	-0.01	-0.02	-0.03	-0.04	-0.02	-0.00	-0.00	-0.00	-0.01	]
C [	0.00	0.00	0.01	-0.00	0.02	-0.03	-0.02	0.05	0.06	-0.01	0.00	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.01	0.00	-0.01	-0.02	-0.02	-0.01	0.05	0.02	-0.01	0.00	0.00	0.01	]
T [	-0.00	-0.00	-0.00	-0.01	0.00	0.04	0.05	-0.02	-0.03	-0.00	-0.00	0.01	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 244

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 146

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 99

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 29

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 23

CWM

PFM

HCWM

5 profiles found for the same TF (ELK1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001057.1	ELK1	ENCSR000ECI	HeLa-S3	Homo sapiens	MA0028.3
BP001058.1	ELK1	ENCSR000EFU	K562	Homo sapiens	MA0028.3
BP001059.1	ELK1	ENCSR382WLL	MCF-7	Homo sapiens	MA0028.3
BP001060.1	ELK1	ENCSR664OKA	IMR-90	Homo sapiens	UN0494.1
BP001061.1	ELK1	ENCSR717QSS	HepG2	Homo sapiens	MA0028.3