Detailed information of deep learning profile BP001030.1

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This page shows detailed deep learning-derived predictions and motifs for PBX2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX2
Model ID: BP001030.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1113.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40425  
Source: ENCSR849DFF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.08 -0.00 -0.00 0.00 0.06 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.07 -0.00 -0.00 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.06 0.00 -0.00 -0.00 0.09 0.00 -0.00 0.00 0.02 0.00 -0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.04 -0.00 -0.00 0.02 0.05 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 670 694 607 577 659 650 668 698 670 673 700 699 628 713 662 312 109 3014 153 149 18 2506 27 2448 228 490 560 712 772 741 659 701 670 716 632 649 853 822 762 656 741 738 722 724 687 689 726 751 732 788 ]
C [ 880 775 862 862 830 869 896 889 847 781 836 833 885 762 761 118 57 26 582 68 9 16 2905 57 360 1002 909 823 748 706 797 750 774 801 1002 1014 805 772 814 865 815 843 813 762 799 778 905 784 810 749 ]
G [ 812 924 943 928 987 878 861 808 766 926 942 864 910 891 909 193 2861 28 939 222 3061 552 8 410 2141 1199 696 1032 962 945 964 939 1036 914 819 809 860 880 799 832 897 865 857 927 917 928 821 880 896 886 ]
T [ 733 702 683 728 619 698 670 700 812 715 617 699 672 729 763 2472 68 27 1421 2656 7 21 155 180 366 404 930 528 613 703 675 705 615 664 642 623 577 621 720 742 642 649 703 682 692 700 643 680 657 672 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.01 -0.01 -0.00 0.08 -0.03 -0.02 0.00 0.07 -0.03 0.04 -0.00 -0.00 -0.01 0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.02 -0.03 -0.03 0.01 0.02 -0.05 -0.05 0.08 -0.02 0.00 0.01 0.02 0.02 ]
G [ 0.01 0.01 0.01 0.00 -0.02 0.06 -0.01 -0.00 -0.02 0.09 0.03 -0.05 0.03 0.03 0.02 0.00 0.02 ]
T [ 0.00 0.00 0.00 0.02 0.05 -0.02 -0.03 0.04 0.05 -0.04 -0.03 0.03 -0.01 0.00 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 469

CWM

PFM

     

HCWM

2 profiles found for the same TF (PBX2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001028.1 PBX2 ENCSR263DFP K562 Homo sapiens MA1113.3
BP001029.1 PBX2 ENCSR633EIC K562 Homo sapiens MA1113.3
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