Detailed information of deep learning profile BP001028.1

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This page shows detailed deep learning-derived predictions and motifs for PBX2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX2
Model ID: BP001028.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1113.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40425  
Source: ENCSR263DFP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 0.00 0.00 0.07 -0.00 0.00 0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.05 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.04 0.03 0.01 -0.00 0.04 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 3526 3428 3619 3503 3547 3532 3586 3528 3583 3414 3482 3528 3503 3306 3416 3869 3231 4469 4184 3566 6482 2368 1145 12854 714 1523 2868 12710 194 2125 4455 1723 2584 2883 2967 3189 3216 3461 3658 3753 3536 3612 3567 3772 3675 3600 3574 3493 3728 3596 ]
C [ 2779 2844 2768 2846 2838 2823 2785 2877 2815 2817 2896 2656 2871 2809 2680 2619 3738 2427 2035 2571 1242 82 22 5 491 93 476 14 1352 669 762 5454 3755 2739 2765 2640 2842 2785 2735 2622 2749 2737 2834 2776 2671 2809 2784 2787 2733 2670 ]
G [ 2937 2973 2994 2967 3001 3017 2930 2949 3000 2908 2897 3015 3112 2695 3668 2789 2801 3221 3681 3905 2773 386 11373 7 670 966 2396 162 345 6938 5392 2797 1897 2624 2767 3225 3056 2996 3084 2951 2802 2981 2920 2843 2913 2954 3007 2953 2914 3105 ]
T [ 3647 3644 3508 3573 3503 3517 3588 3535 3491 3750 3614 3690 3403 4079 3125 3612 3119 2772 2989 2847 2392 10053 349 23 11014 10307 7149 3 10998 3157 2280 2915 4653 4643 4390 3835 3775 3647 3412 3563 3802 3559 3568 3498 3630 3526 3524 3656 3514 3518 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.02 0.00 0.01 0.07 -0.02 0.00 0.00 0.07 -0.03 -0.00 0.02 -0.01 -0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 -0.01 -0.01 -0.05 -0.04 -0.00 -0.03 -0.03 -0.05 0.02 -0.00 -0.02 0.03 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.03 0.06 -0.03 -0.01 -0.01 0.01 0.01 -0.02 0.03 0.02 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 0.04 -0.02 -0.03 0.04 0.04 0.02 -0.06 0.04 0.00 -0.01 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5743

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4657

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3257

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 921

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 795

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 592

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 328

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 77

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 43

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 32

CWM

PFM

     

HCWM

2 profiles found for the same TF (PBX2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001029.1 PBX2 ENCSR633EIC K562 Homo sapiens MA1113.3
BP001030.1 PBX2 ENCSR849DFF HepG2 Homo sapiens MA1113.3
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