Detailed information of deep learning profile BP001030.1

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This page shows detailed deep learning-derived predictions and motifs for PBX2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX2
Model ID: BP001030.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1113.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40425  
Source: ENCSR849DFF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.05 0.02 -0.00 -0.00 0.04 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.02 0.00 -0.00 0.00 0.09 -0.00 -0.00 0.00 0.06 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.00 -0.00 -0.00 0.07 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.06 0.00 -0.00 -0.00 0.08 -0.00 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 672 657 680 643 700 692 682 703 649 642 742 720 621 577 623 642 664 615 705 675 703 613 528 930 404 366 180 155 21 7 2656 1421 27 68 2472 763 729 672 699 617 715 812 700 670 698 619 728 683 702 733 ]
C [ 886 896 880 821 928 917 927 857 865 897 832 799 880 860 809 819 914 1036 939 964 945 962 1032 696 1199 2141 410 8 552 3061 222 939 28 2861 193 909 891 910 864 942 926 766 808 861 878 987 928 943 924 812 ]
G [ 749 810 784 905 778 799 762 813 843 815 865 814 772 805 1014 1002 801 774 750 797 706 748 823 909 1002 360 57 2905 16 9 68 582 26 57 118 761 762 885 833 836 781 847 889 896 869 830 862 862 775 880 ]
T [ 788 732 751 726 689 687 724 722 738 741 656 762 822 853 649 632 716 670 701 659 741 772 712 560 490 228 2448 27 2506 18 149 153 3014 109 312 662 713 628 699 700 673 670 698 668 650 659 577 607 694 670 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 0.00 -0.01 0.03 -0.03 -0.04 0.05 0.04 -0.03 -0.02 0.05 0.02 0.00 0.00 0.00 ]
C [ 0.02 0.00 0.02 0.03 0.03 -0.05 0.03 0.09 -0.02 -0.00 -0.01 0.06 -0.02 0.00 0.01 0.01 0.01 ]
G [ 0.02 0.02 0.01 0.00 -0.02 0.08 -0.05 -0.05 0.02 0.01 -0.03 -0.03 0.02 -0.00 0.00 0.01 0.01 ]
T [ 0.00 -0.01 -0.00 -0.00 0.04 -0.03 0.07 0.00 -0.02 -0.03 0.08 -0.00 -0.01 0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 469

CWM

PFM

     

HCWM

2 profiles found for the same TF (PBX2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001028.1 PBX2 ENCSR263DFP K562 Homo sapiens MA1113.3
BP001029.1 PBX2 ENCSR633EIC K562 Homo sapiens MA1113.3
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