Detailed information of deep learning profile BP001029.1

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This page shows detailed deep learning-derived predictions and motifs for PBX2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX2
Model ID: BP001029.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1113.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40425  
Source: ENCSR633EIC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.05 -0.00 -0.00 0.00 0.05 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.04 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.00 0.03 0.02 0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 263 291 292 299 322 292 286 305 246 245 271 250 253 291 362 256 392 305 296 523 157 27 1159 14 107 286 1157 14 117 399 93 212 218 207 250 228 232 296 287 270 266 325 305 302 279 291 269 292 303 277 ]
C [ 277 266 252 291 289 294 295 317 311 322 285 324 313 290 264 382 225 237 227 123 13 6 13 80 16 61 1 86 82 68 602 402 302 281 255 281 277 252 294 309 308 286 287 257 325 269 290 276 295 301 ]
G [ 353 309 329 309 297 322 344 303 351 342 310 334 277 337 267 345 333 407 440 338 14 1128 2 79 133 416 15 16 725 556 293 177 270 263 342 374 318 351 309 291 323 264 300 289 307 315 331 309 310 294 ]
T [ 281 308 301 275 266 266 249 249 266 265 308 266 331 256 281 191 224 225 211 190 990 13 0 1001 918 411 1 1058 250 151 186 383 384 423 327 291 347 275 284 304 277 299 282 326 263 299 284 297 266 302 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.05 -0.03 -0.01 0.01 0.05 -0.03 -0.00 0.01 -0.01 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.00 -0.01 -0.02 0.00 -0.00 -0.02 -0.02 0.02 0.00 -0.01 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.04 -0.00 -0.00 -0.00 0.02 0.01 -0.03 0.02 0.02 0.01 0.00 0.01 0.00 0.01 ]
T [ -0.00 -0.00 -0.01 -0.01 0.03 -0.02 -0.03 0.03 0.02 0.00 -0.04 0.03 -0.00 -0.01 -0.00 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2026

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 518

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 361

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 59

CWM

PFM

     

HCWM

2 profiles found for the same TF (PBX2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001028.1 PBX2 ENCSR263DFP K562 Homo sapiens MA1113.3
BP001030.1 PBX2 ENCSR849DFF HepG2 Homo sapiens MA1113.3
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