Detailed information of deep learning profile BP001029.1

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This page shows detailed deep learning-derived predictions and motifs for PBX2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX2
Model ID: BP001029.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1113.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40425  
Source: ENCSR633EIC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.00 0.02 0.03 0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.04 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.05 0.00 -0.00 -0.00 0.05 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 302 266 297 284 299 263 326 282 299 277 304 284 275 347 291 327 423 384 383 186 151 250 1058 1 411 918 1001 0 13 990 190 211 225 224 191 281 256 331 266 308 265 266 249 249 266 266 275 301 308 281 ]
C [ 294 310 309 331 315 307 289 300 264 323 291 309 351 318 374 342 263 270 177 293 556 725 16 15 416 133 79 2 1128 14 338 440 407 333 345 267 337 277 334 310 342 351 303 344 322 297 309 329 309 353 ]
G [ 301 295 276 290 269 325 257 287 286 308 309 294 252 277 281 255 281 302 402 602 68 82 86 1 61 16 80 13 6 13 123 227 237 225 382 264 290 313 324 285 322 311 317 295 294 289 291 252 266 277 ]
T [ 277 303 292 269 291 279 302 305 325 266 270 287 296 232 228 250 207 218 212 93 399 117 14 1157 286 107 14 1159 27 157 523 296 305 392 256 362 291 253 250 271 245 246 305 286 292 322 299 292 291 263 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.00 -0.01 -0.00 0.03 -0.04 0.00 0.02 0.03 -0.03 -0.02 0.03 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.00 0.01 0.02 0.02 -0.03 0.01 0.02 -0.00 -0.00 -0.00 0.04 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 -0.01 0.00 0.02 -0.02 -0.02 -0.00 0.00 -0.02 -0.01 0.00 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.00 -0.03 0.05 0.01 -0.01 -0.03 0.05 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2026

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 518

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 361

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 59

CWM

PFM

     

HCWM

2 profiles found for the same TF (PBX2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001028.1 PBX2 ENCSR263DFP K562 Homo sapiens MA1113.3
BP001030.1 PBX2 ENCSR849DFF HepG2 Homo sapiens MA1113.3
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