Detailed information of deep learning profile BP001028.1

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This page shows detailed deep learning-derived predictions and motifs for PBX2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX2
Model ID: BP001028.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1113.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40425  
Source: ENCSR263DFP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.01 0.03 0.04 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.07 0.00 0.00 -0.00 0.07 0.00 0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3518 3514 3656 3524 3526 3630 3498 3568 3559 3802 3563 3412 3647 3775 3835 4390 4643 4653 2915 2280 3157 10998 3 7149 10307 11014 23 349 10053 2392 2847 2989 2772 3119 3612 3125 4079 3403 3690 3614 3750 3491 3535 3588 3517 3503 3573 3508 3644 3647 ]
C [ 3105 2914 2953 3007 2954 2913 2843 2920 2981 2802 2951 3084 2996 3056 3225 2767 2624 1897 2797 5392 6938 345 162 2396 966 670 7 11373 386 2773 3905 3681 3221 2801 2789 3668 2695 3112 3015 2897 2908 3000 2949 2930 3017 3001 2967 2994 2973 2937 ]
G [ 2670 2733 2787 2784 2809 2671 2776 2834 2737 2749 2622 2735 2785 2842 2640 2765 2739 3755 5454 762 669 1352 14 476 93 491 5 22 82 1242 2571 2035 2427 3738 2619 2680 2809 2871 2656 2896 2817 2815 2877 2785 2823 2838 2846 2768 2844 2779 ]
T [ 3596 3728 3493 3574 3600 3675 3772 3567 3612 3536 3753 3658 3461 3216 3189 2967 2883 2584 1723 4455 2125 194 12710 2868 1523 714 12854 1145 2368 6482 3566 4184 4469 3231 3869 3416 3306 3503 3528 3482 3414 3583 3528 3586 3532 3547 3503 3619 3428 3526 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.01 0.00 0.04 -0.06 0.02 0.04 0.04 -0.03 -0.02 0.04 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.02 0.03 -0.02 0.01 0.01 -0.01 -0.01 -0.03 0.06 -0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.03 -0.02 -0.00 0.02 -0.05 -0.03 -0.03 -0.00 -0.04 -0.05 -0.01 -0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.01 -0.01 -0.01 0.02 -0.00 -0.03 0.07 0.00 0.00 -0.02 0.07 0.01 0.00 0.02 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5743

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4657

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3257

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 921

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 795

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 592

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 328

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 77

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 43

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 32

CWM

PFM

     

HCWM

2 profiles found for the same TF (PBX2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001029.1 PBX2 ENCSR633EIC K562 Homo sapiens MA1113.3
BP001030.1 PBX2 ENCSR849DFF HepG2 Homo sapiens MA1113.3
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