Detailed information of deep learning profile BP000965.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000965.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR736BUG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.02 0.04 0.00 0.05 0.05 0.04 0.01 0.05 -0.00 0.03 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 513 499 516 513 483 491 496 476 499 441 481 422 450 477 437 411 416 399 432 472 500 305 425 309 366 29 543 0 1 5 1278 3 363 25 1035 337 435 366 457 415 446 488 474 492 500 524 484 466 499 480 ]
C [ 920 936 882 855 912 910 908 924 906 966 878 960 1037 1006 966 1075 1096 1115 1084 1034 905 1026 1184 1087 2074 2529 8 2617 2621 2498 1336 2614 40 2258 740 1003 911 1045 986 949 1008 962 955 934 884 889 882 958 916 924 ]
G [ 689 707 735 730 734 734 728 721 755 679 733 734 673 651 717 659 621 644 641 613 758 768 393 487 77 9 1710 8 0 3 5 5 1843 154 452 718 625 714 708 787 699 725 703 703 765 735 760 737 721 700 ]
T [ 503 483 492 527 496 490 493 504 465 539 533 509 465 491 505 480 492 467 468 506 462 526 623 742 108 58 364 0 3 119 6 3 379 188 398 567 654 500 474 474 472 450 493 496 476 477 499 464 489 521 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.01 -0.01 0.01 -0.02 -0.02 -0.02 0.03 -0.03 -0.00 -0.02 0.01 -0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.02 0.04 -0.02 0.05 0.05 0.04 0.02 0.05 -0.02 0.03 -0.00 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.00 -0.01 -0.01 0.04 -0.01 -0.01 -0.02 -0.01 -0.01 0.04 0.00 0.00 0.00 0.00 0.01 ]
T [ 0.00 0.00 0.01 0.01 -0.01 -0.01 0.00 -0.02 -0.02 0.01 -0.02 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2998

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1012

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 656

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 483

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 47

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000964.1 EGR1 ENCSR290ZOS liver Homo sapiens MA0162.5
Showing 1 profiles of page 2 from 2 pages