Detailed information of deep learning profile BP000964.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000964.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR290ZOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 -0.00 0.03 -0.00 0.07 0.01 0.05 0.05 0.07 -0.00 0.05 0.02 0.00 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 494 457 481 495 505 517 489 495 486 496 538 479 542 671 553 381 188 407 1 4 88 4 0 330 63 112 727 597 495 476 471 464 483 506 467 502 498 443 479 549 513 484 547 513 518 462 505 489 481 495 ]
C [ 687 737 709 750 712 702 663 688 682 673 712 677 652 565 631 425 118 1727 5 6 0 0 1 1617 4 58 479 392 679 725 583 589 610 576 664 703 649 667 688 689 675 697 677 694 698 682 694 662 648 681 ]
G [ 908 867 880 846 870 826 919 889 896 945 889 991 982 868 990 720 2200 63 2532 1240 2448 2532 2537 4 2445 1960 1007 1118 1000 846 990 1042 1077 1040 1000 882 950 953 953 835 906 880 872 857 850 879 837 877 911 868 ]
T [ 449 477 468 447 451 493 467 466 474 424 399 391 362 434 364 1012 32 341 0 1288 2 2 0 587 26 408 325 431 364 491 494 443 368 416 407 451 441 475 418 465 444 477 442 474 472 515 502 510 498 494 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 -0.00 0.01 -0.00 -0.03 -0.05 0.01 -0.03 -0.02 -0.01 -0.00 -0.00 0.02 0.01 0.01 0.00 ]
C [ 0.01 0.00 0.00 0.01 -0.01 0.05 -0.03 -0.01 -0.04 -0.01 -0.03 0.04 -0.03 -0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.01 0.03 -0.03 0.07 0.02 0.05 0.05 0.07 -0.03 0.05 0.02 0.00 0.00 0.01 0.01 ]
T [ 0.00 0.00 0.00 0.02 -0.03 -0.00 -0.03 0.03 -0.04 -0.03 -0.03 0.01 -0.02 0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 32

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000965.1 EGR1 ENCSR736BUG liver Homo sapiens MA0162.5
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