Detailed information of deep learning profile BP000962.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000962.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR026GSW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.02 0.05 0.00 0.06 0.05 0.04 0.01 0.07 0.00 0.02 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1796 1690 1655 1666 1616 1624 1957 1572 1803 1461 1520 1747 1651 1635 1677 1362 2014 1240 1416 193 1951 5 4 25 4612 5 1616 316 2944 1441 1481 1216 1362 1339 1549 1738 1539 2099 2310 2193 1605 1663 1690 1604 1843 1668 1731 1660 2156 1725 ]
C [ 3892 3672 4091 3990 3814 3895 3864 4138 3964 4101 4529 4030 4131 4076 3486 3762 4865 4417 8134 9828 48 10313 10340 9512 5669 10275 954 7512 3897 4216 3835 4587 4474 3875 4429 4176 4106 3742 3445 3586 3496 3553 3561 3980 3370 3505 3441 3489 3435 3489 ]
G [ 2776 2761 2845 2747 2802 3081 2721 2832 2958 2921 2533 2858 2888 2978 3087 3576 1693 1941 400 100 7202 40 6 5 38 41 6325 1114 2079 2809 2991 2920 2780 2807 2713 2734 2893 2805 2943 2769 3297 2933 3362 2804 2922 3409 3434 3366 2924 2922 ]
T [ 1899 2240 1772 1960 2131 1763 1821 1821 1638 1880 1781 1728 1693 1674 2113 1663 1791 2765 413 242 1162 5 13 821 44 42 1468 1421 1443 1897 2056 1640 1747 2342 1672 1715 1825 1717 1665 1815 1965 2214 1750 1975 2228 1781 1757 1848 1848 2227 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.00 0.01 -0.02 0.00 -0.02 -0.02 -0.02 0.02 -0.04 -0.01 -0.02 0.01 -0.01 -0.00 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.05 -0.03 0.06 0.05 0.05 0.02 0.07 -0.01 0.03 0.00 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.00 -0.01 -0.02 0.04 -0.02 -0.01 -0.03 -0.01 -0.02 0.04 -0.00 0.01 0.00 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 -0.02 -0.01 -0.01 -0.03 -0.02 0.00 -0.03 -0.02 -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2594

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1395

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 757

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 606

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 506

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 470

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 292

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 148

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 46

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000965.1 EGR1 ENCSR736BUG liver Homo sapiens MA0162.5
Showing 1 profiles of page 2 from 2 pages