Detailed information of deep learning profile BP000959.1

This page shows detailed deep learning-derived predictions and motifs for EGR1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000959.1
Cell line/tissue: Ishikawa
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BSQ
Model: BPNet
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Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.04 0.00 0.06 0.04 0.04 0.00 0.06 -0.00 0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

A [ 1593 1619 1568 1615 1578 1714 1669 1613 1529 1581 1484 1532 1484 1639 1448 1485 1284 1372 1494 1342 1373 1407 1171 1522 1193 1378 227 1913 3 10 55 4785 4 1496 259 2866 1123 1427 1276 1331 1242 1358 1511 1495 1571 1621 1637 1550 1521 1562 ]
C [ 3489 3595 3567 3441 3496 3577 3503 3531 3569 3554 3749 3582 3674 3776 3825 3742 3997 4036 3883 4177 3996 3597 3989 4220 3825 7054 8846 26 9589 9539 8626 4603 9588 497 7314 3208 3954 3702 3983 4025 3796 3959 3646 3809 3688 3502 3632 3400 3490 3552 ]
G [ 2842 2788 2727 2852 2877 2695 2828 2787 2760 2927 2725 2766 2869 2652 2761 2774 2810 2550 2744 2534 2588 2930 2772 1872 2283 609 175 6549 11 36 41 169 9 6458 1080 2146 2580 2478 2782 2745 2854 2721 2748 2762 2729 2945 2756 2983 2840 2871 ]
T [ 1683 1605 1745 1699 1656 1621 1607 1676 1749 1545 1649 1727 1580 1540 1573 1606 1516 1649 1486 1554 1650 1673 1675 1993 2306 566 359 1119 4 22 885 50 6 1156 954 1387 1950 2000 1566 1506 1715 1569 1702 1541 1619 1539 1582 1674 1756 1622 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.01 0.01 -0.02 0.01 -0.03 -0.03 -0.03 0.03 -0.04 -0.00 -0.03 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.02 0.04 -0.03 0.06 0.04 0.04 0.02 0.06 -0.02 0.03 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.01 -0.01 0.04 -0.02 -0.00 -0.02 -0.00 -0.02 0.04 -0.00 0.01 0.00 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.01 -0.03 -0.03 0.01 -0.04 -0.02 -0.01 -0.00 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 818

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000965.1 EGR1 ENCSR736BUG liver Homo sapiens MA0162.5
Showing 1 profiles of page 2 from 2 pages