Detailed information of deep learning profile BP000958.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000958.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BRZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.05 0.00 0.07 0.05 0.05 0.01 0.07 -0.00 0.02 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1455 1324 1275 1215 1267 1149 1726 1259 1382 1104 1138 1648 1356 1315 1182 990 1810 958 1198 127 1797 1 3 14 4126 0 1232 212 2270 1106 1144 977 1053 1065 1142 1257 1240 1866 1936 1895 1299 1217 1288 1189 1351 1351 1339 1286 1873 1241 ]
C [ 3097 2537 3215 3121 2723 2868 2717 3137 3163 3043 3487 2888 3036 2757 2460 2626 3339 2973 5921 7404 4 7799 7772 7247 3622 7794 1019 5388 2841 2884 2579 3536 3441 2708 3379 3204 3249 2656 2525 2633 2419 2483 2443 3122 2385 2443 2394 2445 2405 2501 ]
G [ 1930 2015 2052 1964 1965 2469 1934 2048 1969 1971 1748 1851 2080 2378 2236 2869 1203 1350 362 72 5208 9 15 13 40 4 4341 759 1459 2193 2414 1970 2018 1975 1936 1940 1974 1958 2063 1940 2624 2085 2738 2026 2072 2663 2697 2708 2129 2039 ]
T [ 1328 1934 1268 1510 1855 1324 1433 1366 1296 1692 1437 1423 1338 1360 1932 1325 1458 2529 329 207 801 1 20 536 22 12 1218 1451 1240 1627 1673 1327 1298 2062 1353 1409 1347 1330 1286 1342 1468 2025 1341 1473 2002 1353 1380 1371 1403 2029 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 -0.02 0.01 -0.04 -0.03 -0.03 0.03 -0.04 -0.00 -0.02 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.02 0.05 -0.04 0.07 0.05 0.05 0.02 0.07 -0.02 0.03 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.02 0.05 -0.02 -0.00 -0.03 -0.01 -0.02 0.04 -0.00 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.00 0.01 -0.02 -0.01 -0.01 -0.03 -0.02 0.01 -0.04 -0.02 -0.01 -0.00 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 79

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000965.1 EGR1 ENCSR736BUG liver Homo sapiens MA0162.5
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