Detailed information of deep learning profile BP000957.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000957.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BRG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 70 78 76 64 86 73 88 66 87 71 74 75 79 55 72 89 11 21 28 40 49 252 0 0 4 212 157 63 51 85 56 62 69 84 71 82 69 69 87 83 66 76 51 85 69 78 57 78 71 74 ]
C [ 179 175 175 186 165 196 162 191 170 201 221 120 178 173 167 170 446 5 304 221 184 66 472 0 240 129 155 136 206 120 181 161 173 170 162 149 162 143 152 164 143 152 158 161 155 146 167 140 172 163 ]
G [ 150 136 157 153 152 135 155 145 147 150 113 209 139 140 131 194 6 438 80 115 138 149 0 472 69 91 121 197 120 200 185 180 158 145 171 161 166 175 160 159 173 166 157 157 175 164 166 174 160 157 ]
T [ 73 83 64 69 69 68 67 70 68 50 64 68 76 104 102 19 9 8 60 96 101 5 0 0 159 40 39 76 95 67 50 69 72 73 68 80 75 85 73 66 90 78 106 69 73 84 82 80 69 78 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.02 -0.02 0.00 -0.00 -0.01 -0.01 ]
C [ 0.00 -0.00 -0.00 -0.00 0.02 -0.01 0.01 -0.00 -0.00 -0.01 0.03 -0.02 0.00 -0.01 0.00 -0.00 0.00 ]
G [ -0.00 -0.00 -0.00 0.00 -0.02 0.02 -0.01 -0.00 -0.00 0.00 -0.02 0.03 -0.01 -0.00 -0.00 0.00 -0.00 ]
T [ -0.01 -0.00 -0.00 -0.01 -0.01 -0.02 -0.00 -0.01 -0.00 -0.02 -0.02 -0.01 0.01 -0.01 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 70

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000965.1 EGR1 ENCSR736BUG liver Homo sapiens MA0162.5
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