Detailed information of deep learning profile BP000955.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000955.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BMQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.00 0.05 0.01 0.04 0.04 0.06 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2341 2232 2296 2295 2245 2365 2275 2315 2362 2230 2261 2242 2256 2235 2308 2056 2221 2039 2091 2572 2644 1781 1319 2044 9 74 749 31 5 1628 381 669 2719 2319 2286 2222 2267 2100 2102 2167 2024 2086 2166 2133 2184 2358 2178 2211 2263 2251 ]
C [ 3877 3824 3847 3866 3818 3780 3572 3721 3669 3752 3551 3721 3580 3487 3573 3611 3577 3583 3712 3347 3143 2824 1750 8064 1 160 4 4 4 8491 170 935 2812 2253 3665 3929 3142 3110 3627 3415 3599 3707 3557 3512 3651 3611 3635 3687 3614 3663 ]
G [ 4812 4717 4862 4775 4887 4752 5084 4822 5022 4932 5239 4978 5200 5163 5168 5456 5559 5708 5703 5351 5736 4916 9535 818 13045 7688 12269 13012 13048 62 12226 9747 5937 6558 5574 4979 5724 5992 5451 5534 5550 5102 5323 5238 5181 5033 5161 4940 5099 4936 ]
T [ 2029 2286 2054 2123 2109 2162 2128 2201 2006 2145 2008 2118 2023 2174 2010 1936 1702 1729 1553 1789 1536 3538 455 2133 4 5137 37 12 2 2878 282 1708 1591 1929 1534 1929 1926 1857 1879 1943 1886 2164 2013 2176 2043 2057 2085 2221 2083 2209 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 -0.00 -0.01 -0.02 -0.03 0.00 -0.03 -0.03 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.01 -0.00 0.03 -0.02 -0.00 -0.02 -0.01 -0.02 0.03 -0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.01 0.00 0.01 0.00 0.02 -0.01 0.05 0.02 0.04 0.04 0.06 -0.01 0.04 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.02 0.00 -0.03 0.02 -0.02 -0.02 -0.02 0.01 -0.01 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1752

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 185

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 30

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000965.1 EGR1 ENCSR736BUG liver Homo sapiens MA0162.5
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