Detailed information of deep learning profile BP000954.1

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This page shows detailed deep learning-derived predictions and motifs for EGR1 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000954.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BJA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.00 0.03 0.00 -0.00 0.00 -0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.02 -0.00 0.05 0.01 0.03 0.04 0.04 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 611 587 568 595 597 590 638 568 589 580 580 558 590 568 580 582 562 526 619 763 698 454 219 376 0 0 149 18 2 285 20 134 823 687 633 560 569 598 551 599 535 548 574 560 610 588 606 541 616 580 ]
C [ 1022 990 1032 1023 1052 1042 920 1006 1060 1015 972 1047 969 975 1020 891 943 944 914 818 811 663 194 2594 0 2 0 1 8 2600 6 110 693 534 1010 1085 905 882 941 837 995 1002 937 965 988 1027 979 986 986 1014 ]
G [ 1210 1228 1216 1215 1231 1168 1298 1244 1214 1218 1244 1249 1256 1322 1261 1406 1481 1498 1471 1331 1450 1099 2929 66 3381 2159 3227 3363 3368 7 3344 2723 1463 1725 1319 1251 1445 1428 1457 1505 1392 1288 1356 1363 1307 1265 1284 1293 1248 1245 ]
T [ 539 577 566 549 502 582 526 564 519 569 586 528 567 517 521 503 396 414 378 470 423 1166 40 346 1 1221 6 0 4 490 12 415 403 436 420 486 463 474 433 441 460 544 515 494 477 502 513 562 532 543 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 -0.00 0.00 -0.00 -0.02 -0.03 0.01 -0.01 -0.02 -0.01 -0.01 -0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 -0.00 0.03 -0.01 -0.01 -0.02 0.00 -0.01 0.03 -0.01 -0.01 -0.00 0.00 0.00 ]
G [ 0.01 0.00 0.01 -0.00 0.02 -0.01 0.05 0.02 0.03 0.04 0.04 -0.02 0.04 0.01 0.01 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.01 -0.02 -0.01 -0.03 0.02 -0.02 -0.02 -0.02 -0.00 -0.01 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 610

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 331

CWM

PFM

     

HCWM

11 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000965.1 EGR1 ENCSR736BUG liver Homo sapiens MA0162.5
Showing 1 profiles of page 2 from 2 pages