Detailed information of deep learning profile BP000856.1

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This page shows detailed deep learning-derived predictions and motifs for PRDM1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PRDM1
Model ID: BP000856.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0508.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O75626  
Source: ENCSR977FEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.01 0.02 0.03 -0.00 -0.00 0.00 0.05 0.04 0.05 0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.01 -0.00 -0.00 0.00 0.03 -0.00 0.05 0.00 0.00 -0.00 0.05 0.00 0.01 0.00 -0.00 -0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 0.00 -0.00 0.03 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1904 1808 1814 1811 1868 1918 1950 1910 1966 1808 1750 1875 1949 1893 1935 1946 1931 1866 2192 2337 3447 4022 4845 705 1657 224 6262 5938 6287 24 28 1289 2775 2111 1843 1746 1640 1790 1845 1818 1876 1822 1858 1776 1753 1843 1830 1869 1874 1807 ]
C [ 1294 1348 1330 1336 1259 1273 1271 1295 1297 1339 1331 1336 1258 1226 1261 1270 1203 1370 1054 747 830 765 95 177 285 2 36 15 7 45 404 661 1052 1107 1147 1243 1321 1302 1318 1250 1249 1309 1260 1334 1372 1394 1368 1314 1345 1367 ]
G [ 1422 1480 1552 1543 1517 1527 1497 1498 1432 1438 1573 1478 1489 1559 1570 1520 1663 1483 1494 2403 1083 852 1052 4999 1412 6093 4 357 13 6221 433 3130 1279 1204 1376 1559 1654 1560 1642 1539 1499 1589 1493 1591 1507 1503 1528 1520 1496 1575 ]
T [ 1702 1686 1626 1632 1678 1604 1604 1619 1627 1737 1668 1633 1626 1644 1556 1586 1525 1603 1582 835 962 683 330 441 2968 3 20 12 15 32 5457 1242 1216 1900 1956 1774 1707 1670 1517 1715 1698 1602 1711 1621 1690 1582 1596 1619 1607 1573 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.02 0.03 -0.00 -0.01 0.01 0.05 0.04 0.05 -0.01 -0.04 0.00 0.00 0.00 -0.00 ]
C [ 0.00 -0.01 0.00 -0.00 -0.02 -0.02 0.01 -0.03 -0.01 -0.03 -0.01 -0.02 0.01 -0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.01 -0.01 -0.00 -0.01 0.04 -0.01 0.06 -0.04 0.01 -0.03 0.05 -0.00 0.01 0.00 -0.00 0.00 ]
T [ 0.00 -0.01 0.00 -0.01 -0.02 -0.01 0.02 -0.04 -0.01 -0.03 -0.02 -0.01 0.04 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3915

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1981

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 885

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 395

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 25

CWM

PFM

     

HCWM

2 profiles found for the same TF (PRDM1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000854.1 PRDM1 ENCSR000ECY HeLa-S3 Homo sapiens MA0508.4
BP000855.1 PRDM1 ENCSR098YLE HEK293 Homo sapiens MA0508.4
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