Detailed information of deep learning profile BP000854.1

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This page shows detailed deep learning-derived predictions and motifs for PRDM1 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PRDM1
Model ID: BP000854.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0508.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O75626  
Source: ENCSR000ECY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.01 0.02 0.05 -0.00 -0.00 0.00 0.08 0.06 0.07 -0.00 -0.00 -0.00 0.01 0.00 0.00 ]
C [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
G [ -0.00 0.01 -0.00 -0.00 0.00 0.05 -0.00 0.09 -0.00 0.00 -0.00 0.08 0.00 0.01 -0.00 -0.00 -0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1203 1202 1239 1222 1247 1271 1271 1249 1257 1182 1231 1242 1309 1230 1300 1313 1250 1170 1389 1457 2246 2537 3096 428 1028 105 4042 3842 4020 38 24 899 1822 1452 1289 1142 1138 1161 1187 1207 1197 1248 1210 1149 1207 1135 1207 1229 1225 1260 ]
C [ 815 855 822 807 813 812 793 847 837 852 827 837 811 792 772 779 821 878 640 508 577 505 36 123 147 4 14 3 2 52 350 434 685 725 684 862 887 821 814 797 803 789 801 813 858 860 828 831 842 872 ]
G [ 948 893 956 950 910 876 944 890 915 910 922 902 927 954 955 954 986 947 887 1566 625 543 730 3247 841 3967 8 223 14 3893 302 1902 772 670 844 914 924 943 993 991 973 942 954 1015 920 968 931 935 903 921 ]
T [ 1111 1127 1060 1098 1107 1118 1069 1091 1068 1133 1097 1096 1030 1101 1050 1031 1020 1082 1161 546 629 492 215 279 2061 1 13 9 41 94 3401 842 798 1230 1260 1159 1128 1152 1083 1082 1104 1098 1112 1100 1092 1114 1111 1082 1107 1024 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.02 0.03 0.05 -0.01 -0.02 0.01 0.08 0.07 0.07 -0.04 -0.07 -0.00 0.01 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.00 -0.04 -0.03 0.01 -0.04 -0.02 -0.04 -0.03 -0.02 0.01 -0.01 0.00 0.00 -0.00 ]
G [ 0.00 0.02 -0.01 -0.01 0.00 0.06 0.00 0.09 -0.04 0.01 -0.04 0.08 0.00 0.02 -0.00 -0.00 -0.00 ]
T [ 0.00 -0.01 -0.00 -0.02 -0.03 -0.01 0.03 -0.06 -0.04 -0.06 -0.03 -0.01 0.06 0.00 -0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1655

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 822

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 103

CWM

PFM

     

HCWM

2 profiles found for the same TF (PRDM1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000855.1 PRDM1 ENCSR098YLE HEK293 Homo sapiens MA0508.4
BP000856.1 PRDM1 ENCSR977FEF A549 Homo sapiens MA0508.4
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