Detailed information of deep learning profile BP000856.1

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This page shows detailed deep learning-derived predictions and motifs for PRDM1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PRDM1
Model ID: BP000856.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0508.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O75626  
Source: ENCSR977FEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ -0.00 -0.00 0.00 0.01 0.00 0.05 -0.00 0.00 0.00 0.05 -0.00 0.03 0.00 -0.00 -0.00 0.01 0.00 ]
G [ 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.05 0.04 0.05 0.00 -0.00 -0.00 0.03 0.02 0.01 0.00 0.00 ]

Frequency matrix

       
A [ 1573 1607 1619 1596 1582 1690 1621 1711 1602 1698 1715 1517 1670 1707 1774 1956 1900 1216 1242 5457 32 15 12 20 3 2968 441 330 683 962 835 1582 1603 1525 1586 1556 1644 1626 1633 1668 1737 1627 1619 1604 1604 1678 1632 1626 1686 1702 ]
C [ 1575 1496 1520 1528 1503 1507 1591 1493 1589 1499 1539 1642 1560 1654 1559 1376 1204 1279 3130 433 6221 13 357 4 6093 1412 4999 1052 852 1083 2403 1494 1483 1663 1520 1570 1559 1489 1478 1573 1438 1432 1498 1497 1527 1517 1543 1552 1480 1422 ]
G [ 1367 1345 1314 1368 1394 1372 1334 1260 1309 1249 1250 1318 1302 1321 1243 1147 1107 1052 661 404 45 7 15 36 2 285 177 95 765 830 747 1054 1370 1203 1270 1261 1226 1258 1336 1331 1339 1297 1295 1271 1273 1259 1336 1330 1348 1294 ]
T [ 1807 1874 1869 1830 1843 1753 1776 1858 1822 1876 1818 1845 1790 1640 1746 1843 2111 2775 1289 28 24 6287 5938 6262 224 1657 705 4845 4022 3447 2337 2192 1866 1931 1946 1935 1893 1949 1875 1750 1808 1966 1910 1950 1918 1868 1811 1814 1808 1904 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.04 -0.01 -0.02 -0.03 -0.01 -0.04 0.02 -0.01 -0.02 -0.01 0.00 -0.01 0.00 ]
C [ 0.00 -0.00 0.00 0.01 -0.00 0.05 -0.03 0.01 -0.04 0.06 -0.01 0.04 -0.01 -0.00 -0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.00 -0.01 0.01 -0.02 -0.01 -0.03 -0.01 -0.03 0.01 -0.02 -0.02 -0.00 0.00 -0.01 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.04 -0.01 0.05 0.04 0.05 0.01 -0.01 -0.00 0.03 0.02 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3915

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1981

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 885

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 395

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 25

CWM

PFM

     

HCWM

2 profiles found for the same TF (PRDM1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000854.1 PRDM1 ENCSR000ECY HeLa-S3 Homo sapiens MA0508.4
BP000855.1 PRDM1 ENCSR098YLE HEK293 Homo sapiens MA0508.4
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