Detailed information of deep learning profile BP000855.1

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This page shows detailed deep learning-derived predictions and motifs for PRDM1 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PRDM1
Model ID: BP000855.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0508.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O75626  
Source: ENCSR098YLE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 0.02 -0.00 -0.00 0.00 0.04 0.03 0.04 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.06 -0.00 0.00 -0.00 0.03 0.00 0.01 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6192 5985 6157 6182 6451 6210 6394 6109 6302 6028 6555 6288 6531 6272 6585 6028 6730 6440 6796 6233 6546 6612 7872 9064 11267 3265 6621 202 16641 15038 16485 925 265 5778 6908 6027 5994 5589 5726 5420 6211 6087 6488 5862 6074 5726 6126 5720 6141 5841 ]
C [ 2616 2565 2573 2543 2509 2531 2416 2567 2425 2505 2503 2496 2237 2307 2148 2407 2072 2367 2121 2455 2184 1918 2194 1874 323 586 420 0 75 95 5 423 2468 1836 2505 2572 2432 2330 2411 2535 2567 2617 2594 2601 2408 2546 2583 2485 2607 2654 ]
G [ 4050 4268 4219 4344 4074 4248 4155 4375 4221 4465 4081 4252 3981 4571 4339 4851 4327 4562 3953 4575 4531 5388 3715 3510 3731 11297 3836 16561 10 1589 110 14824 3538 5522 4125 3951 4114 4685 4072 4724 4063 4135 3714 4371 4130 4443 3984 4488 4143 4395 ]
T [ 3906 3946 3815 3695 3730 3775 3799 3713 3816 3766 3625 3728 4015 3614 3692 3478 3635 3395 3894 3501 3503 2846 2983 2316 1443 1616 5887 1 38 42 164 592 10493 3628 3226 4214 4224 4160 4555 4085 3923 3925 3968 3930 4152 4049 4071 4071 3873 3874 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 0.02 0.00 -0.00 0.02 0.04 0.04 0.04 -0.01 -0.03 0.00 0.01 0.00 0.00 ]
C [ 0.00 -0.01 0.00 -0.00 -0.01 -0.01 0.01 -0.04 -0.01 -0.02 -0.02 -0.01 0.02 -0.00 0.00 0.00 -0.00 ]
G [ 0.01 0.01 0.00 0.00 0.01 0.03 0.01 0.06 -0.03 0.01 -0.01 0.04 0.01 0.02 0.00 0.00 0.00 ]
T [ -0.00 -0.01 -0.00 -0.01 -0.01 -0.00 0.01 -0.04 -0.02 -0.03 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1868

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1208

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1096

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1045

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 540

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 429

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 424

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 354

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 306

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 279

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 271

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 139

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_23

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_24

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 95

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_28

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_31

Num. of seqlets: 22

CWM

PFM

     

HCWM

2 profiles found for the same TF (PRDM1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000854.1 PRDM1 ENCSR000ECY HeLa-S3 Homo sapiens MA0508.4
BP000856.1 PRDM1 ENCSR977FEF A549 Homo sapiens MA0508.4
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