Detailed information of deep learning profile BP000855.1

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This page shows detailed deep learning-derived predictions and motifs for PRDM1 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PRDM1
Model ID: BP000855.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0508.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O75626  
Source: ENCSR098YLE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.01 0.00 0.03 -0.00 0.00 -0.00 0.06 0.00 0.02 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 0.03 0.04 0.00 -0.00 -0.00 0.02 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3874 3873 4071 4071 4049 4152 3930 3968 3925 3923 4085 4555 4160 4224 4214 3226 3628 10493 592 164 42 38 1 5887 1616 1443 2316 2983 2846 3503 3501 3894 3395 3635 3478 3692 3614 4015 3728 3625 3766 3816 3713 3799 3775 3730 3695 3815 3946 3906 ]
C [ 4395 4143 4488 3984 4443 4130 4371 3714 4135 4063 4724 4072 4685 4114 3951 4125 5522 3538 14824 110 1589 10 16561 3836 11297 3731 3510 3715 5388 4531 4575 3953 4562 4327 4851 4339 4571 3981 4252 4081 4465 4221 4375 4155 4248 4074 4344 4219 4268 4050 ]
G [ 2654 2607 2485 2583 2546 2408 2601 2594 2617 2567 2535 2411 2330 2432 2572 2505 1836 2468 423 5 95 75 0 420 586 323 1874 2194 1918 2184 2455 2121 2367 2072 2407 2148 2307 2237 2496 2503 2505 2425 2567 2416 2531 2509 2543 2573 2565 2616 ]
T [ 5841 6141 5720 6126 5726 6074 5862 6488 6087 6211 5420 5726 5589 5994 6027 6908 5778 265 925 16485 15038 16641 202 6621 3265 11267 9064 7872 6612 6546 6233 6796 6440 6730 6028 6585 6272 6531 6288 6555 6028 6302 6109 6394 6210 6451 6182 6157 5985 6192 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.03 -0.02 -0.04 0.01 -0.00 -0.01 -0.01 -0.00 -0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.02 0.01 0.04 -0.01 0.01 -0.03 0.06 0.01 0.03 0.01 0.00 0.00 0.01 0.01 ]
G [ -0.00 0.00 0.00 -0.00 0.02 -0.01 -0.02 -0.02 -0.01 -0.04 0.01 -0.01 -0.01 -0.00 0.00 -0.01 0.00 ]
T [ 0.00 0.00 0.01 0.00 -0.03 -0.01 0.04 0.04 0.04 0.02 -0.00 0.00 0.02 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1868

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1208

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1096

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1045

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 540

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 429

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 424

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 354

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 306

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 279

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 271

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 139

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_23

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_24

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_25

Num. of seqlets: 95

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_28

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_31

Num. of seqlets: 22

CWM

PFM

     

HCWM

2 profiles found for the same TF (PRDM1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000854.1 PRDM1 ENCSR000ECY HeLa-S3 Homo sapiens MA0508.4
BP000856.1 PRDM1 ENCSR977FEF A549 Homo sapiens MA0508.4
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