Detailed information of deep learning profile BP000854.1

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This page shows detailed deep learning-derived predictions and motifs for PRDM1 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PRDM1
Model ID: BP000854.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0508.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O75626  
Source: ENCSR000ECY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ -0.00 -0.00 -0.00 0.01 0.00 0.08 -0.00 0.00 -0.00 0.09 -0.00 0.05 0.00 -0.00 -0.00 0.01 -0.00 ]
G [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.01 -0.00 -0.00 -0.00 0.07 0.06 0.08 0.00 -0.00 -0.00 0.05 0.02 0.01 0.00 0.00 ]

Frequency matrix

       
A [ 1024 1107 1082 1111 1114 1092 1100 1112 1098 1104 1082 1083 1152 1128 1159 1260 1230 798 842 3401 94 41 9 13 1 2061 279 215 492 629 546 1161 1082 1020 1031 1050 1101 1030 1096 1097 1133 1068 1091 1069 1118 1107 1098 1060 1127 1111 ]
C [ 921 903 935 931 968 920 1015 954 942 973 991 993 943 924 914 844 670 772 1902 302 3893 14 223 8 3967 841 3247 730 543 625 1566 887 947 986 954 955 954 927 902 922 910 915 890 944 876 910 950 956 893 948 ]
G [ 872 842 831 828 860 858 813 801 789 803 797 814 821 887 862 684 725 685 434 350 52 2 3 14 4 147 123 36 505 577 508 640 878 821 779 772 792 811 837 827 852 837 847 793 812 813 807 822 855 815 ]
T [ 1260 1225 1229 1207 1135 1207 1149 1210 1248 1197 1207 1187 1161 1138 1142 1289 1452 1822 899 24 38 4020 3842 4042 105 1028 428 3096 2537 2246 1457 1389 1170 1250 1313 1300 1230 1309 1242 1231 1182 1257 1249 1271 1271 1247 1222 1239 1202 1203 ]

Hypothetical CWM

   
A [ 0.01 0.01 -0.00 0.00 0.06 -0.01 -0.03 -0.06 -0.04 -0.06 0.03 -0.01 -0.03 -0.02 -0.00 -0.01 0.00 ]
C [ -0.00 -0.00 -0.00 0.02 0.00 0.08 -0.04 0.01 -0.04 0.09 0.00 0.06 0.00 -0.01 -0.01 0.02 0.00 ]
G [ -0.00 0.00 0.00 -0.01 0.01 -0.02 -0.03 -0.04 -0.02 -0.04 0.01 -0.03 -0.04 0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.01 -0.00 -0.07 -0.04 0.07 0.07 0.08 0.01 -0.02 -0.01 0.05 0.03 0.02 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1655

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 822

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 103

CWM

PFM

     

HCWM

2 profiles found for the same TF (PRDM1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000855.1 PRDM1 ENCSR098YLE HEK293 Homo sapiens MA0508.4
BP000856.1 PRDM1 ENCSR977FEF A549 Homo sapiens MA0508.4
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