Detailed information of deep learning profile BP000796.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000796.1
Cell line/tissue: HepG2
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR516SMM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.00 -0.00 0.00 0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.05 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.05 0.04 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 0.01 0.00 0.00 -0.00 0.00 0.01 0.03 0.00 0.03 0.01 0.01 0.00 -0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 416 372 440 448 449 527 507 497 461 467 489 504 478 438 474 444 533 384 213 335 30 5 645 95 981 51 807 439 194 45 558 690 873 418 520 472 450 448 436 446 505 451 461 502 434 476 447 467 437 433 ]
C [ 507 507 503 503 487 492 520 494 530 555 521 573 447 473 610 645 606 378 297 357 1896 1818 131 19 47 42 121 97 11 48 523 623 258 358 367 401 471 493 481 465 437 449 516 451 491 472 471 470 482 540 ]
G [ 516 554 528 519 515 456 486 472 522 441 453 435 514 531 380 382 323 263 515 617 10 5 67 37 157 21 83 130 1742 1761 439 343 361 482 608 609 530 516 498 557 527 488 498 528 560 489 518 555 549 504 ]
T [ 510 516 478 479 498 474 436 486 436 486 486 437 510 507 485 478 487 924 924 640 13 121 1106 1798 764 1835 938 1283 2 95 429 293 457 691 454 467 498 492 534 481 480 561 474 468 464 512 513 457 481 472 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.00 -0.01 -0.04 0.02 0.01 0.03 0.01 0.03 0.01 0.01 -0.01 0.00 0.01 0.01 -0.00 ]
C [ 0.01 0.00 -0.00 -0.00 0.05 0.05 -0.01 -0.02 -0.03 -0.01 -0.02 -0.00 -0.02 -0.01 0.01 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.01 -0.02 -0.00 -0.02 -0.00 -0.02 -0.02 -0.01 0.05 0.04 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.00 -0.01 0.01 0.01 0.03 0.01 0.04 0.02 0.02 -0.04 -0.00 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1611

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 459

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 253

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 60

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 30

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
Showing 1 profiles of page 2 from 2 pages