Detailed information of deep learning profile BP000795.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000795.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR504HOI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ -0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.05 0.06 0.00 -0.00 0.00 -0.00 ]
T [ -0.00 0.01 0.00 0.00 -0.00 0.00 0.01 0.04 0.00 0.04 0.01 0.02 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 395 268 279 263 245 469 462 296 306 252 259 445 277 269 486 417 436 186 127 408 16 2 255 81 718 20 765 250 102 12 294 357 545 380 549 434 423 384 255 229 311 304 419 295 252 449 404 291 279 295 ]
C [ 329 349 285 288 419 263 287 419 327 315 503 322 257 267 307 330 264 199 164 218 1247 1251 180 7 226 16 27 18 6 6 251 549 138 193 176 221 262 279 230 271 241 239 249 255 274 281 269 390 407 398 ]
G [ 262 259 439 451 292 248 260 237 384 234 240 230 499 468 208 192 348 123 382 276 5 3 31 16 82 4 14 30 1156 1240 302 190 182 241 339 338 299 346 415 485 478 422 290 449 490 277 317 287 285 271 ]
T [ 289 399 272 273 319 295 266 323 258 474 273 278 242 271 274 336 227 767 602 373 7 19 809 1171 249 1235 469 977 11 17 428 179 410 461 211 282 291 266 375 290 245 310 317 276 259 268 285 307 304 311 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.00 0.00 -0.01 -0.04 0.02 0.02 0.04 -0.00 0.04 0.02 0.01 -0.02 0.00 0.00 0.01 -0.00 ]
C [ -0.00 0.01 -0.00 0.01 0.07 0.07 -0.03 -0.04 -0.02 -0.02 -0.04 -0.02 -0.03 -0.02 0.00 0.01 -0.01 0.00 ]
G [ 0.01 -0.01 0.01 0.00 -0.02 -0.03 -0.01 -0.04 -0.01 -0.02 -0.04 -0.03 0.06 0.06 0.01 -0.00 0.00 0.00 ]
T [ -0.01 0.01 0.01 0.01 -0.02 0.01 0.02 0.04 0.00 0.04 0.02 0.03 -0.04 -0.01 0.01 0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 321

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 86

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
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