Detailed information of deep learning profile BP000794.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000794.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR041XML
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.03 0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.06 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 ]
G [ 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 0.05 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.01 0.03 0.00 0.05 0.01 0.02 -0.00 -0.00 0.00 -0.00 0.00 0.01 ]

Frequency matrix

       
A [ 3429 3140 3252 3309 3118 4090 3878 3516 3392 3250 3009 3929 3168 3298 3877 3633 4661 2496 1668 3271 214 14 4353 1087 6748 450 5014 2759 1640 449 3101 4020 5752 2954 4268 3619 3394 3464 3146 3152 3540 3209 3656 3580 3259 3564 3527 3455 3138 3576 ]
C [ 3034 3043 2832 2787 3019 2611 2873 3304 3118 3007 3368 2994 2841 2647 2992 3003 2506 2113 1620 2592 12320 11927 1061 375 793 299 696 354 31 262 3442 4618 1495 2161 2108 2553 2983 2622 2568 2785 2497 2631 2767 2620 2910 2890 2702 2781 2934 3002 ]
G [ 2689 2995 3375 3262 2923 2652 2834 2690 3166 2569 2770 2508 3489 3650 2496 2208 2748 1239 3659 3652 142 6 288 286 1021 79 623 803 11099 11621 2908 1810 2067 2460 3289 3176 2863 3186 3008 3458 3257 3012 2797 3235 3168 2766 3045 2968 3179 2719 ]
T [ 3675 3649 3368 3469 3767 3474 3242 3317 3151 4001 3680 3396 3329 3232 3462 3983 2912 6979 5880 3312 151 880 7125 11079 4265 11999 6494 8911 57 495 3376 2379 3513 5252 3162 3479 3587 3555 4105 3432 3533 3975 3607 3392 3490 3607 3553 3623 3576 3530 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.01 -0.01 -0.05 0.02 0.02 0.04 0.01 0.04 0.02 0.02 -0.01 -0.00 0.01 0.01 -0.00 ]
C [ 0.00 0.01 0.00 0.01 0.06 0.07 -0.02 -0.02 -0.03 -0.02 -0.03 -0.01 -0.04 -0.01 0.01 0.02 -0.01 0.00 ]
G [ 0.00 -0.01 0.01 0.01 -0.01 -0.04 -0.01 -0.03 -0.02 -0.03 -0.02 -0.01 0.07 0.06 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.02 0.01 -0.00 -0.02 0.02 0.02 0.04 0.02 0.05 0.02 0.02 -0.04 -0.01 0.01 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4326

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 203

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 22

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
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