Detailed information of deep learning profile BP000793.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000793.1
Cell line/tissue: MCF-7
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BVA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.03 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.01 0.00 -0.00 0.00 0.01 0.03 0.00 0.05 0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 780 803 790 776 952 885 862 845 780 821 980 872 836 884 880 1090 746 458 611 59 1 1144 310 1962 139 1433 804 421 54 936 1163 1569 756 934 814 804 832 775 719 913 802 841 904 777 891 831 833 789 831 831 ]
C [ 876 874 836 894 824 860 935 873 878 899 909 815 778 953 893 862 654 445 544 3293 3333 244 79 83 81 180 111 1 40 913 1181 376 580 646 730 885 810 754 832 732 756 854 766 831 860 835 828 836 905 752 ]
G [ 911 933 905 836 831 868 843 922 842 806 749 959 1048 755 738 653 372 828 1126 30 1 101 145 246 16 105 190 2998 3247 831 526 674 787 1030 1074 847 908 886 1023 943 910 847 926 992 837 846 943 896 844 858 ]
T [ 854 811 890 915 814 808 781 781 921 895 783 775 759 829 910 816 1649 1690 1140 39 86 1932 2887 1130 3185 1703 2316 1 80 741 551 802 1298 811 803 885 871 1006 847 833 953 879 825 821 833 909 817 900 841 980 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.01 0.00 -0.01 -0.07 0.02 0.02 0.04 0.02 0.04 0.01 0.01 -0.03 -0.00 0.01 0.01 -0.00 ]
C [ 0.01 0.01 -0.00 0.00 0.07 0.09 -0.02 -0.02 -0.04 -0.02 -0.02 -0.00 -0.03 -0.02 0.02 0.02 -0.00 0.01 ]
G [ 0.01 -0.00 0.02 0.02 -0.02 -0.03 0.00 -0.02 -0.01 -0.04 -0.03 -0.02 0.08 0.07 0.00 -0.00 0.01 0.01 ]
T [ -0.00 0.01 0.01 0.01 -0.03 0.01 0.01 0.04 0.02 0.05 0.02 0.02 -0.06 -0.01 0.00 -0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1769

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 701

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 33

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages