Detailed information of deep learning profile BP000793.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000793.1
Cell line/tissue: MCF-7
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BVA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.01 0.05 0.00 0.03 0.01 0.00 -0.00 0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 980 841 900 817 909 833 821 825 879 953 833 847 1006 871 885 803 811 1298 802 551 741 80 1 2316 1703 3185 1130 2887 1932 86 39 1140 1690 1649 816 910 829 759 775 783 895 921 781 781 808 814 915 890 811 854 ]
C [ 858 844 896 943 846 837 992 926 847 910 943 1023 886 908 847 1074 1030 787 674 526 831 3247 2998 190 105 16 246 145 101 1 30 1126 828 372 653 738 755 1048 959 749 806 842 922 843 868 831 836 905 933 911 ]
G [ 752 905 836 828 835 860 831 766 854 756 732 832 754 810 885 730 646 580 376 1181 913 40 1 111 180 81 83 79 244 3333 3293 544 445 654 862 893 953 778 815 909 899 878 873 935 860 824 894 836 874 876 ]
T [ 831 831 789 833 831 891 777 904 841 802 913 719 775 832 804 814 934 756 1569 1163 936 54 421 804 1433 139 1962 310 1144 1 59 611 458 746 1090 880 884 836 872 980 821 780 845 862 885 952 776 790 803 780 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.01 0.00 -0.01 -0.06 0.02 0.02 0.05 0.02 0.04 0.01 0.01 -0.03 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.01 -0.00 0.00 0.07 0.08 -0.02 -0.03 -0.04 -0.01 -0.02 0.00 -0.03 -0.02 0.02 0.02 -0.00 0.01 ]
G [ 0.01 -0.00 0.02 0.02 -0.02 -0.03 -0.00 -0.02 -0.02 -0.04 -0.02 -0.02 0.09 0.07 0.00 -0.00 0.01 0.01 ]
T [ -0.00 0.01 0.01 -0.00 -0.03 0.01 0.01 0.04 0.02 0.04 0.02 0.02 -0.07 -0.01 0.00 -0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1769

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 701

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 33

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
Showing 1 profiles of page 2 from 2 pages