Detailed information of deep learning profile BP000792.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000792.1
Cell line/tissue: Ishikawa
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BTD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.03 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.09 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.08 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.00 -0.00 0.00 0.01 0.04 0.00 0.05 0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1360 1259 1323 1413 1325 1653 1550 1429 1354 1258 1327 1644 1499 1414 1577 1403 1774 1005 628 1234 56 1 1794 416 3280 215 2430 1315 677 128 1681 2087 2880 1310 1878 1507 1409 1353 1316 1241 1544 1349 1411 1533 1254 1490 1370 1429 1297 1394 ]
C [ 1430 1477 1401 1368 1377 1246 1525 1571 1551 1517 1544 1523 1265 1243 1527 1581 1247 1017 633 910 5522 5432 317 87 192 188 208 139 9 62 1360 1944 563 948 912 1086 1281 1306 1183 1321 1186 1159 1341 1206 1399 1333 1355 1292 1385 1494 ]
G [ 1324 1448 1532 1484 1395 1297 1318 1277 1452 1222 1348 1133 1569 1624 1116 986 1160 502 1412 1672 33 5 141 115 361 41 193 254 4952 5340 1335 781 975 1134 1693 1644 1425 1505 1439 1686 1528 1443 1367 1529 1572 1317 1446 1463 1494 1365 ]
T [ 1531 1461 1389 1380 1548 1449 1252 1368 1288 1648 1426 1345 1312 1364 1425 1675 1464 3121 2972 1829 34 207 3393 5027 1812 5201 2814 3937 7 115 1269 833 1227 2253 1162 1408 1530 1481 1707 1397 1387 1694 1526 1377 1420 1505 1474 1461 1469 1392 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 0.00 -0.01 -0.07 0.03 0.03 0.05 0.01 0.05 0.02 0.03 -0.03 0.00 0.01 0.02 -0.00 ]
C [ 0.01 0.01 0.00 0.01 0.09 0.10 -0.02 -0.03 -0.03 -0.01 -0.04 -0.00 -0.04 -0.02 0.02 0.02 -0.00 0.00 ]
G [ 0.00 -0.01 0.02 0.02 -0.02 -0.04 -0.00 -0.03 -0.01 -0.03 -0.03 -0.02 0.10 0.08 0.01 0.00 0.01 0.01 ]
T [ -0.00 0.02 0.02 0.01 -0.03 0.02 0.02 0.05 0.02 0.05 0.03 0.03 -0.07 -0.01 0.01 -0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 867

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 552

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 148

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
Showing 1 profiles of page 2 from 2 pages