Detailed information of deep learning profile BP000791.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000791.1
Cell line/tissue: HCT116
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BSC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.01 0.04 0.00 0.03 0.01 0.00 -0.00 0.00 0.01 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.03 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 649 586 628 594 643 618 603 552 612 694 586 560 690 605 643 517 511 881 456 364 506 44 0 1675 1173 2044 632 2003 1369 126 12 797 1303 1119 580 599 561 568 544 543 646 615 520 624 538 573 669 566 591 599 ]
C [ 517 527 544 603 551 521 611 617 556 549 610 697 578 590 547 665 694 443 428 298 563 2161 1992 86 76 9 110 57 40 0 9 659 498 187 400 448 468 651 610 510 500 514 579 505 480 460 534 564 608 573 ]
G [ 480 591 513 485 537 498 529 440 488 463 429 470 454 534 541 452 365 389 216 741 590 10 0 36 91 55 33 39 112 2127 2213 390 224 467 507 620 635 514 507 528 564 572 578 555 617 492 541 575 527 568 ]
T [ 608 550 569 572 523 617 511 645 598 548 629 527 532 525 523 620 684 541 1154 851 595 39 262 457 914 146 1479 155 733 1 20 408 229 481 767 587 590 521 593 673 544 553 577 570 619 729 510 549 528 514 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.01 0.00 -0.01 -0.05 0.02 0.02 0.05 0.01 0.04 0.02 0.01 -0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.00 0.01 0.00 0.01 0.07 0.07 -0.02 -0.03 -0.04 -0.01 -0.02 -0.01 -0.02 -0.02 0.02 0.01 -0.01 0.00 ]
G [ 0.01 -0.01 0.02 0.02 -0.02 -0.02 -0.01 -0.03 -0.01 -0.04 -0.03 -0.02 0.08 0.07 0.00 -0.00 0.01 0.01 ]
T [ -0.00 0.02 0.01 -0.00 -0.02 0.02 0.02 0.04 0.01 0.04 0.02 0.02 -0.05 -0.01 -0.00 -0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 559

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 244

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 91

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 75

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages