Detailed information of deep learning profile BP000791.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000791.1
Cell line/tissue: HCT116
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BSC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.03 0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.00 -0.00 0.00 0.01 0.03 0.00 0.04 0.01 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 514 528 549 510 729 619 570 577 553 544 673 593 521 590 587 767 481 229 408 20 1 733 155 1479 146 914 457 262 39 595 851 1154 541 684 620 523 525 532 527 629 548 598 645 511 617 523 572 569 550 608 ]
C [ 568 527 575 541 492 617 555 578 572 564 528 507 514 635 620 507 467 224 390 2213 2127 112 39 33 55 91 36 0 10 590 741 216 389 365 452 541 534 454 470 429 463 488 440 529 498 537 485 513 591 480 ]
G [ 573 608 564 534 460 480 505 579 514 500 510 610 651 468 448 400 187 498 659 9 0 40 57 110 9 76 86 1992 2161 563 298 428 443 694 665 547 590 578 697 610 549 556 617 611 521 551 603 544 527 517 ]
T [ 599 591 566 669 573 538 624 520 615 646 543 544 568 561 599 580 1119 1303 797 12 126 1369 2003 632 2044 1173 1675 0 44 506 364 456 881 511 517 643 605 690 560 586 694 612 552 603 618 643 594 628 586 649 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 -0.00 -0.01 -0.05 0.02 0.02 0.04 0.01 0.04 0.02 0.02 -0.02 -0.00 0.01 0.02 -0.00 ]
C [ 0.01 0.01 -0.00 0.00 0.07 0.08 -0.02 -0.03 -0.04 -0.01 -0.03 -0.01 -0.02 -0.02 0.02 0.02 -0.01 0.01 ]
G [ 0.00 -0.01 0.01 0.02 -0.02 -0.02 -0.01 -0.02 -0.01 -0.04 -0.03 -0.02 0.07 0.07 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.01 0.01 0.01 -0.02 0.01 0.02 0.04 0.01 0.05 0.02 0.02 -0.05 -0.01 0.00 -0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 559

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 244

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 91

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 75

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
Showing 1 profiles of page 2 from 2 pages