Detailed information of deep learning profile BP000790.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000790.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BMI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.03 0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.08 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.01 0.04 0.00 0.05 0.01 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]

Frequency matrix

       
A [ 1028 1100 985 988 1330 1221 1211 1099 1071 1004 1296 1018 1056 1254 1176 1542 915 606 861 86 5 1575 432 2465 143 1865 1028 545 132 1043 1246 2168 892 1352 1117 1031 1067 963 1053 1259 1062 1168 1188 1058 1089 1114 1120 1018 1122 1106 ]
C [ 1112 1031 1084 1123 1005 1161 1179 1159 1131 1259 1207 1166 1000 1131 1149 989 819 620 867 4291 4209 374 179 152 146 239 146 5 73 1136 1911 509 889 796 945 1202 1063 986 1058 958 1001 1058 982 1030 1105 1023 1053 1133 1153 1059 ]
G [ 1192 1282 1247 1108 1055 1068 1045 1224 1061 1043 907 1241 1416 998 957 881 514 1265 1613 52 5 101 108 339 24 215 277 3927 4166 1180 621 722 864 1259 1240 1043 1172 1158 1351 1188 1159 1102 1215 1245 1071 1117 1171 1178 1065 1018 ]
T [ 1150 1069 1166 1263 1092 1032 1047 1000 1219 1176 1072 1057 1010 1099 1200 1070 2234 1991 1141 53 263 2432 3763 1526 4169 2163 3031 5 111 1123 704 1083 1837 1075 1180 1206 1180 1375 1020 1077 1260 1154 1097 1149 1217 1228 1138 1153 1142 1299 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.00 -0.01 -0.06 0.03 0.02 0.05 0.01 0.04 0.02 0.02 -0.02 -0.00 0.00 0.02 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.08 0.09 -0.01 -0.02 -0.03 -0.01 -0.02 -0.00 -0.04 -0.01 0.02 0.03 -0.00 0.01 ]
G [ 0.01 0.00 0.02 0.03 -0.01 -0.03 -0.00 -0.02 -0.01 -0.03 -0.02 -0.01 0.08 0.08 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.02 0.01 0.00 -0.02 0.02 0.02 0.04 0.02 0.05 0.02 0.03 -0.06 -0.02 0.01 -0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2080

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1735

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 293

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 272

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 32

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
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