Detailed information of deep learning profile BP000788.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000788.1
Cell line/tissue: K562
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BLK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.05 0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.11 0.11 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.11 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.00 -0.00 -0.00 0.00 0.01 0.05 0.00 0.07 0.01 0.03 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 358 408 380 357 703 673 457 466 413 368 669 441 422 679 595 558 317 193 525 22 0 493 188 1413 98 1099 368 182 23 372 442 845 529 742 624 618 511 365 344 466 390 566 443 378 567 543 430 373 442 428 ]
C [ 478 455 460 636 430 459 629 530 460 689 512 388 359 456 488 413 331 245 317 1869 1879 287 42 26 50 40 37 4 6 461 994 226 300 264 354 428 428 399 422 355 358 429 391 441 488 423 536 580 605 432 ]
G [ 509 681 675 445 404 417 395 587 401 449 363 748 753 352 369 562 164 472 620 14 3 51 50 107 7 44 57 1723 1877 536 252 275 378 569 561 423 579 650 759 695 643 485 703 698 441 502 517 525 454 413 ]
T [ 569 370 399 476 377 365 433 331 640 408 370 337 380 427 462 381 1102 1004 452 9 32 1083 1634 368 1759 731 1452 5 8 545 226 568 707 339 375 445 396 500 389 398 523 434 377 397 418 446 431 436 413 641 ]

Hypothetical CWM

   
A [ 0.02 0.00 -0.01 0.00 -0.02 -0.08 0.04 0.04 0.07 0.02 0.06 0.03 0.03 -0.03 -0.01 0.00 0.02 -0.00 ]
C [ 0.02 0.02 0.01 0.01 0.11 0.12 -0.02 -0.03 -0.05 -0.02 -0.04 -0.01 -0.04 -0.02 0.03 0.04 -0.00 0.01 ]
G [ 0.01 -0.00 0.04 0.03 -0.03 -0.04 -0.00 -0.04 -0.01 -0.05 -0.03 -0.02 0.10 0.11 0.02 0.01 0.02 0.02 ]
T [ -0.00 0.02 0.01 0.00 -0.03 0.03 0.02 0.06 0.02 0.07 0.04 0.04 -0.07 -0.02 0.01 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 943

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 518

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 507

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 65

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
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