Detailed information of deep learning profile BP000787.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000787.1
Cell line/tissue: H1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BIV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.02 0.08 0.00 0.08 0.02 -0.00 -0.00 -0.00 0.01 0.01 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.18 0.14 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.16 0.18 0.00 0.00 0.00 0.00 ]
T [ -0.01 0.01 0.00 -0.01 -0.00 -0.00 0.01 0.04 0.00 0.07 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 772 850 945 854 833 835 797 956 1084 828 847 1032 820 889 836 576 1425 760 394 936 7 15 2568 1511 3227 577 3153 2375 28 12 1100 1947 2120 723 1041 852 846 653 802 825 1231 716 799 710 821 790 761 840 1031 872 ]
C [ 964 986 909 929 788 1057 1127 833 977 1142 1142 1023 1014 901 1097 1049 731 542 400 1042 3501 3274 79 52 10 189 35 49 4 8 940 820 238 956 467 629 1170 1241 686 880 622 956 758 784 693 914 1096 1070 827 794 ]
G [ 889 931 789 800 849 872 753 805 708 654 816 715 752 698 528 457 497 251 1590 663 1 9 47 27 71 50 36 327 3490 3486 462 462 619 773 1081 856 572 718 874 1099 940 1041 1112 838 733 1032 865 812 977 938 ]
T [ 898 756 880 940 1053 759 846 929 754 899 718 753 937 1035 1062 1441 870 1970 1139 882 14 225 829 1933 215 2707 299 772 1 17 1021 294 546 1071 934 1186 935 911 1161 719 730 810 854 1191 1276 787 801 801 688 919 ]

Hypothetical CWM

   
A [ 0.01 -0.01 0.02 0.00 -0.01 0.01 -0.04 -0.10 0.04 0.05 0.09 0.03 0.08 0.03 0.02 -0.03 0.01 0.02 0.03 -0.00 0.01 0.00 ]
C [ 0.02 0.04 0.03 0.05 0.02 0.04 0.18 0.15 -0.03 -0.05 -0.06 -0.00 -0.05 -0.02 -0.02 -0.05 0.05 0.05 0.00 0.02 0.02 0.03 ]
G [ 0.03 0.03 0.02 -0.00 0.05 0.04 -0.05 -0.01 -0.02 -0.05 -0.00 -0.05 -0.05 -0.02 0.17 0.18 0.03 0.03 0.04 0.03 0.04 0.02 ]
T [ -0.00 0.01 -0.00 0.02 0.02 -0.00 -0.04 0.02 0.05 0.09 0.03 0.09 0.06 0.05 -0.11 -0.03 0.01 -0.01 0.00 0.02 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 851

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 221

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 147

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 128

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 67

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages