Detailed information of deep learning profile BP000787.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000787.1
Cell line/tissue: H1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BIV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.07 0.00 0.04 0.01 -0.00 -0.00 -0.01 0.00 0.01 -0.01 ]
C [ 0.00 0.00 0.00 0.00 0.18 0.16 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.14 0.18 0.01 0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 -0.00 -0.00 -0.00 0.02 0.08 0.00 0.08 0.02 0.03 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 919 688 801 801 787 1276 1191 854 810 730 719 1161 911 935 1186 934 1071 546 294 1021 17 1 772 299 2707 215 1933 829 225 14 882 1139 1970 870 1441 1062 1035 937 753 718 899 754 929 846 759 1053 940 880 756 898 ]
C [ 938 977 812 865 1032 733 838 1112 1041 940 1099 874 718 572 856 1081 773 619 462 462 3486 3490 327 36 50 71 27 47 9 1 663 1590 251 497 457 528 698 752 715 816 654 708 805 753 872 849 800 789 931 889 ]
G [ 794 827 1070 1096 914 693 784 758 956 622 880 686 1241 1170 629 467 956 238 820 940 8 4 49 35 189 10 52 79 3274 3501 1042 400 542 731 1049 1097 901 1014 1023 1142 1142 977 833 1127 1057 788 929 909 986 964 ]
T [ 872 1031 840 761 790 821 710 799 716 1231 825 802 653 846 852 1041 723 2120 1947 1100 12 28 2375 3153 577 3227 1511 2568 15 7 936 394 760 1425 576 836 889 820 1032 847 828 1084 956 797 835 833 854 945 850 772 ]

Hypothetical CWM

   
A [ 0.00 -0.01 0.02 0.00 -0.01 0.01 -0.03 -0.11 0.05 0.06 0.09 0.03 0.09 0.05 0.02 -0.04 -0.00 0.02 0.02 -0.00 0.01 -0.00 ]
C [ 0.02 0.04 0.03 0.04 0.03 0.03 0.18 0.17 -0.02 -0.05 -0.05 -0.00 -0.05 -0.02 -0.01 -0.05 0.04 0.05 -0.00 0.02 0.03 0.03 ]
G [ 0.03 0.02 0.02 0.00 0.05 0.05 -0.05 -0.02 -0.02 -0.05 -0.00 -0.06 -0.05 -0.03 0.15 0.18 0.04 0.02 0.05 0.03 0.04 0.02 ]
T [ 0.00 0.01 -0.00 0.03 0.02 0.01 -0.03 0.02 0.03 0.08 0.03 0.09 0.05 0.04 -0.10 -0.04 0.01 -0.01 0.00 0.02 -0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 851

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 221

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 147

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 128

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 67

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
Showing 1 profiles of page 2 from 2 pages