Detailed information of deep learning profile BP000786.1

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This page shows detailed deep learning-derived predictions and motifs for SRF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SRF
Model ID: BP000786.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCSR000BGE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.01 0.04 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.07 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 0.07 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.03 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 461 401 414 428 412 415 393 398 413 473 387 365 486 416 438 380 364 686 391 237 322 45 2 1155 856 1540 399 1486 880 80 20 356 595 789 365 391 344 339 336 380 418 419 341 362 358 383 459 413 352 360 ]
C [ 428 449 483 494 457 448 575 486 496 488 469 561 488 503 429 522 572 403 292 262 613 1608 1521 115 98 17 233 37 43 2 32 606 666 223 359 383 468 614 533 384 446 468 506 446 444 451 472 508 539 496 ]
G [ 443 507 494 426 464 455 416 432 431 428 421 448 418 454 501 427 344 346 271 859 486 33 6 56 96 58 64 45 123 1622 1622 417 241 320 447 483 483 400 461 498 488 458 471 483 512 426 450 449 412 487 ]
T [ 373 348 314 357 372 387 321 389 365 316 428 331 313 332 337 376 425 270 751 347 284 19 176 379 655 90 1009 137 659 1 31 326 203 373 534 448 410 352 375 443 353 360 387 414 391 445 324 335 402 362 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 0.01 -0.02 -0.06 0.03 0.02 0.05 0.00 0.04 0.02 0.01 -0.03 -0.00 -0.00 0.01 -0.01 ]
C [ 0.01 0.01 -0.00 0.01 0.07 0.07 -0.02 -0.03 -0.03 -0.00 -0.02 -0.02 -0.03 -0.02 0.02 0.02 0.00 0.00 ]
G [ 0.00 0.00 0.03 0.02 -0.02 -0.03 -0.02 -0.02 -0.01 -0.03 -0.03 -0.02 0.08 0.07 0.00 -0.00 0.01 0.01 ]
T [ -0.01 0.01 -0.00 -0.01 -0.03 0.01 0.01 0.04 0.00 0.05 0.02 0.03 -0.06 -0.01 0.00 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 907

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 153

CWM

PFM

     

HCWM

11 profiles found for the same TF (SRF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
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