JASPAR - GATA1 - BP000784.1

This page shows detailed deep learning-derived predictions and motifs for GATA1 in erythroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA1
Model ID:	BP000784.1
Cell line/tissue:	erythroblast
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0140.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15976
Source:	ENCSR000EXP
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 25703

Contribution weight matrix (CWM)

A [	0.00	-0.00	0.02	-0.00	0.10	0.00	0.06	0.03	-0.00	0.00	0.00	0.00	]
C [	0.00	0.01	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.10	0.00	0.00	0.00	-0.00	0.01	0.00	0.00	0.00	]
T [	-0.00	0.00	0.00	0.00	0.00	0.11	0.00	0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	6822	7091	6914	7011	7089	6989	7278	7131	6848	6631	7257	6994	6797	7520	6389	5628	4239	3486	4219	5889	6555	6777	6706	6939	8705	5367	16615	3	25686	4	23673	21353	5075	9610	8854	7762	7391	6731	6519	6819	6893	6721	6772	7163	7050	6783	7126	7082	7085	6773	]
C [	5972	5880	6027	6069	5822	6052	5970	5721	5737	6107	5706	6139	6775	5721	6178	7871	5105	3567	5273	5558	6057	5620	5749	5672	4259	8909	545	6	5	12	36	497	5204	5077	5184	5794	5420	5749	5609	5674	5602	5976	5795	5913	5837	6042	5926	5842	5882	5909	]
G [	6234	6131	6063	6267	6193	6386	5942	6275	6330	6642	6571	6568	6382	6610	6501	5891	5630	11416	9823	6992	6743	7100	6877	6174	6918	7326	278	25688	3	13	40	2604	12691	7925	6473	5815	6266	6026	6449	6824	6475	6583	6350	6240	6374	6410	6004	6180	6244	6258	]
T [	6675	6601	6699	6356	6599	6276	6513	6576	6788	6323	6169	6002	5749	5852	6635	6313	10729	7234	6388	7264	6348	6206	6371	6918	5821	4101	8265	6	9	25674	1954	1249	2733	3091	5192	6332	6626	7197	7126	6386	6733	6423	6786	6387	6442	6468	6647	6599	6492	6763	]

Hypothetical CWM

A [	-0.00	0.01	0.01	-0.00	0.03	-0.03	0.10	-0.06	0.06	0.04	-0.00	0.01	0.00	]
C [	0.01	0.01	0.01	0.02	0.01	-0.05	-0.05	-0.03	-0.03	-0.02	0.02	0.01	0.01	]
G [	0.02	0.01	0.01	0.02	-0.04	0.10	-0.07	-0.05	-0.06	0.00	0.03	0.01	0.01	]
T [	0.00	0.00	0.00	0.01	0.02	-0.02	-0.02	0.11	0.01	-0.01	-0.01	-0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 212

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 210

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 86

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 44

CWM

PFM

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000782.1	GATA1	ENCSR000EFT	K562	Homo sapiens	MA0140.3
BP000783.1	GATA1	ENCSR000EWM	K562	Homo sapiens	MA0140.3
BP000785.1	GATA1	ENCSR000EXR	erythroblast	Homo sapiens	MA0140.3