JASPAR - GATA1 - BP000783.1

This page shows detailed deep learning-derived predictions and motifs for GATA1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA1
Model ID:	BP000783.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0140.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P15976
Source:	ENCSR000EWM
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6501

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	0.10	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.01	0.00	0.00	0.00	0.00	0.09	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.00	0.00	]
T [	-0.00	0.00	-0.00	0.03	0.05	-0.00	0.08	0.00	0.01	-0.00	-0.00	-0.00	]

Frequency matrix

A [	1546	1505	1540	1521	1461	1480	1552	1517	1486	1531	1510	1559	1571	1493	1431	1148	622	524	297	482	6499	3	1	1943	871	1355	1504	1302	1341	1271	1654	1427	1644	2719	1437	1441	1257	1257	1340	1371	1382	1472	1458	1471	1380	1518	1480	1449	1560	1432	]
C [	1788	1785	1764	1810	1888	1780	1718	1810	1842	1853	1858	1747	1732	1833	1628	1806	2341	3556	925	9	0	0	6500	105	2037	1949	1805	2148	2076	1979	2012	2620	3039	1479	1579	1927	1751	1754	1811	1806	1842	1852	1807	1719	1802	1735	1711	1776	1707	1751	]
G [	1617	1606	1628	1597	1623	1604	1647	1609	1633	1566	1577	1619	1660	1588	1710	1541	1401	1495	149	39	1	2	0	372	2504	1332	1714	1667	1658	1795	1521	1482	988	1296	2102	1670	1620	1945	1768	1694	1735	1572	1653	1662	1671	1639	1660	1699	1598	1691	]
T [	1550	1605	1569	1573	1529	1637	1584	1565	1540	1551	1556	1576	1538	1587	1732	2006	2137	926	5130	5971	1	6496	0	4081	1089	1865	1478	1384	1426	1456	1314	972	830	1007	1383	1463	1873	1545	1582	1630	1542	1605	1583	1649	1648	1609	1650	1577	1636	1627	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	-0.02	-0.01	-0.02	0.01	0.10	-0.04	-0.02	0.01	-0.00	0.00	-0.00	-0.00	]
C [	0.01	0.01	0.01	0.02	0.03	0.01	-0.04	-0.04	-0.04	0.09	-0.04	0.02	0.01	0.02	0.02	]
G [	0.01	0.01	0.01	0.01	0.02	-0.01	-0.02	-0.02	-0.03	-0.03	0.03	0.02	0.01	0.01	0.02	]
T [	-0.00	-0.00	-0.00	0.00	-0.02	0.03	0.05	-0.06	0.08	-0.04	0.02	-0.00	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 351

CWM

PFM

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000782.1	GATA1	ENCSR000EFT	K562	Homo sapiens	MA0140.3
BP000784.1	GATA1	ENCSR000EXP	erythroblast	Homo sapiens	MA0140.3
BP000785.1	GATA1	ENCSR000EXR	erythroblast	Homo sapiens	MA0140.3