Detailed information of deep learning profile BP000782.1

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This page shows detailed deep learning-derived predictions and motifs for GATA1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA1
Model ID: BP000782.1
Cell line/tissue: K562
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
JASPAR ID: MA0140.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P15976  
Source: ENCSR000EFT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.00 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.08 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 0.02 0.04 0.00 0.07 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 5089 5151 5179 5146 5220 4911 5245 5004 5334 5071 5349 5184 5544 5420 5131 4756 4406 2529 2199 1197 1804 19954 30 11 6238 2955 4769 5317 4813 4974 4812 5412 4978 5545 7949 5036 5195 4675 4548 4697 4834 5063 5250 5191 5155 4986 5293 5080 5291 5299 ]
C [ 4852 4950 4782 4775 4792 5110 4709 4839 4851 5019 5133 5121 4877 4732 4788 4451 5068 6115 9935 2395 135 10 9 19998 382 5648 5325 4910 5593 5290 5318 5597 7371 8340 4377 4482 5193 5002 4885 5086 4975 5079 4914 4857 4566 4812 4735 4673 4609 4642 ]
G [ 4405 4470 4364 4539 4336 4455 4384 4567 4419 4546 4283 4299 4342 4381 4332 4688 4142 3741 4188 565 70 48 12 8 628 7179 3321 4400 4320 4422 4699 4230 4030 3047 4015 5947 4611 4397 5250 4711 4516 4617 4258 4365 4537 4587 4438 4567 4574 4481 ]
T [ 5676 5451 5697 5562 5674 5546 5684 5612 5418 5386 5257 5418 5259 5489 5771 6127 6406 7637 3700 15865 18013 10 19971 5 12774 4240 6607 5395 5296 5336 5193 4783 3643 3090 3681 4557 5023 5948 5339 5528 5697 5263 5600 5609 5764 5637 5556 5702 5548 5600 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.01 -0.01 0.01 0.08 -0.02 -0.02 0.01 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.02 0.00 -0.04 -0.05 -0.04 0.08 -0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 -0.01 -0.03 -0.01 -0.04 -0.03 0.02 0.02 0.01 0.01 0.01 ]
T [ -0.00 0.01 -0.01 0.03 0.04 -0.05 0.07 -0.03 0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 72

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 62

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 33

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 32

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 22

CWM

PFM

     

HCWM

3 profiles found for the same TF (GATA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000783.1 GATA1 ENCSR000EWM K562 Homo sapiens MA0140.3
BP000784.1 GATA1 ENCSR000EXP erythroblast Homo sapiens MA0140.3
BP000785.1 GATA1 ENCSR000EXR erythroblast Homo sapiens MA0140.3
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