Detailed information of deep learning profile BP000740.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000740.1
Cell line/tissue: K562
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR290MUH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.03 -0.00 0.00 0.08 0.09 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.03 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.00 0.04 0.07 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 4753 4748 4851 4748 4909 4806 4823 4594 4641 4850 4632 4804 5026 4890 5307 5510 5164 2666 3791 13454 280 1849 110 64 7 198 502 2015 3298 3726 4166 4624 4484 4688 4663 4773 4566 4723 4658 4803 4954 4408 4632 4696 4643 4636 4674 4671 4591 4800 ]
C [ 7708 7398 7493 7346 7191 7422 7514 7586 7646 7470 7544 7281 7538 6965 7404 8130 6399 9518 11368 2579 17416 313 168 24055 24180 708 4862 7469 7289 7119 8240 6897 6989 7547 7364 7297 7510 7078 7465 7565 7362 7413 7381 7242 7457 7340 7355 7404 7475 7251 ]
G [ 6519 6729 6642 6979 6815 6931 6779 6732 6811 6461 6960 7258 6270 7227 6632 5610 7824 5474 4214 6033 1984 407 197 58 9 13649 16724 4616 6072 6112 6899 7007 7252 6720 6787 6869 6735 6857 6993 6503 6605 6819 6624 6696 6742 6623 6792 6605 6725 6769 ]
T [ 5225 5330 5219 5132 5290 5046 5089 5293 5107 5424 5069 4862 5371 5123 4862 4955 4818 6547 4832 2139 4525 21636 23730 28 9 9650 2117 10105 7546 7248 4900 5677 5480 5250 5391 5266 5394 5547 5089 5334 5284 5565 5568 5571 5363 5606 5384 5525 5414 5385 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.00 0.03 -0.04 0.01 -0.01 -0.04 -0.05 -0.05 -0.03 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.01 -0.01 0.03 -0.04 -0.02 0.08 0.09 -0.01 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 -0.00 0.01 0.00 -0.00 -0.03 -0.03 -0.02 0.06 0.04 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.01 0.01 -0.01 0.02 0.05 0.07 -0.03 -0.04 0.00 -0.01 0.02 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 973

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 781

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 265

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 77

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages