Detailed information of deep learning profile BP000740.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000740.1
Cell line/tissue: K562
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR290MUH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 0.07 0.04 0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.09 0.08 0.00 -0.00 0.03 -0.00 0.01 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 5385 5414 5525 5384 5606 5363 5571 5568 5565 5284 5334 5089 5547 5394 5266 5391 5250 5480 5677 4900 7248 7546 10105 2117 9650 9 28 23730 21636 4525 2139 4832 6547 4818 4955 4862 5123 5371 4862 5069 5424 5107 5293 5089 5046 5290 5132 5219 5330 5225 ]
C [ 6769 6725 6605 6792 6623 6742 6696 6624 6819 6605 6503 6993 6857 6735 6869 6787 6720 7252 7007 6899 6112 6072 4616 16724 13649 9 58 197 407 1984 6033 4214 5474 7824 5610 6632 7227 6270 7258 6960 6461 6811 6732 6779 6931 6815 6979 6642 6729 6519 ]
G [ 7251 7475 7404 7355 7340 7457 7242 7381 7413 7362 7565 7465 7078 7510 7297 7364 7547 6989 6897 8240 7119 7289 7469 4862 708 24180 24055 168 313 17416 2579 11368 9518 6399 8130 7404 6965 7538 7281 7544 7470 7646 7586 7514 7422 7191 7346 7493 7398 7708 ]
T [ 4800 4591 4671 4674 4636 4643 4696 4632 4408 4954 4803 4658 4723 4566 4773 4663 4688 4484 4624 4166 3726 3298 2015 502 198 7 64 110 1849 280 13454 3791 2666 5164 5510 5307 4890 5026 4804 4632 4850 4641 4594 4823 4806 4909 4748 4851 4748 4753 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.02 -0.01 0.00 -0.04 -0.03 0.07 0.05 0.02 -0.01 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.04 0.06 -0.02 -0.03 -0.03 -0.00 0.00 0.01 -0.00 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.00 -0.01 0.09 0.08 -0.02 -0.04 0.03 -0.01 0.01 0.01 0.00 0.01 ]
T [ -0.00 -0.00 -0.01 -0.01 -0.03 -0.05 -0.05 -0.04 -0.01 0.01 -0.04 0.03 -0.00 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 973

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 781

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 265

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 77

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages