Detailed information of deep learning profile BP000739.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000739.1
Cell line/tissue: HepG2
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR269TNX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 0.07 0.05 0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.03 0.04 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.09 0.08 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 3985 4011 4078 3956 3890 4015 4124 3949 3860 3809 3740 4058 4077 3837 4097 3992 4020 3922 3555 5235 5684 7281 1488 6959 6 16 17962 16721 3658 1741 3854 4901 3991 3710 3472 3726 3836 3555 3710 3994 3742 3938 3787 3810 3879 3909 3741 3797 3852 3915 ]
C [ 5166 5031 5136 5125 5137 5158 5038 5217 5194 5073 5153 5304 5184 5328 5223 5288 5368 5332 5332 4754 4505 3701 13054 10604 10 19 80 214 1436 4310 3323 4521 5921 4459 5169 5520 4781 5461 5401 4845 5279 5105 5050 5211 5111 5221 5067 5106 5037 5027 ]
G [ 5499 5646 5412 5575 5589 5498 5552 5531 5405 5464 5618 5281 5594 5497 5378 5612 5283 5476 5952 5367 5253 5593 3235 480 18153 18101 78 147 12844 2008 8051 6684 4814 6150 5670 5277 5646 5521 5577 5686 5601 5713 5783 5564 5479 5503 5663 5695 5695 5607 ]
T [ 3530 3492 3554 3524 3564 3509 3466 3483 3721 3834 3669 3537 3325 3518 3482 3288 3509 3450 3341 2824 2738 1605 403 137 11 44 60 1098 242 10121 2952 2074 3454 3861 3869 3657 3917 3643 3492 3655 3558 3424 3560 3595 3711 3547 3709 3582 3596 3631 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 0.02 -0.00 0.00 -0.04 -0.02 0.07 0.05 0.02 -0.01 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.03 0.06 -0.02 -0.03 -0.03 -0.01 -0.00 0.01 -0.00 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.01 -0.01 0.09 0.08 -0.02 -0.03 0.03 -0.01 0.01 0.01 0.00 0.01 ]
T [ 0.00 -0.00 -0.00 -0.02 -0.03 -0.05 -0.05 -0.04 -0.01 0.01 -0.03 0.03 0.00 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1629

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 750

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 341

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 44

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 32

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 22

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages