Detailed information of deep learning profile BP000739.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000739.1
Cell line/tissue: HepG2
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR269TNX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.08 0.09 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.04 0.03 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 0.00 0.05 0.07 0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3631 3596 3582 3709 3547 3711 3595 3560 3424 3558 3655 3492 3643 3917 3657 3869 3861 3454 2074 2952 10121 242 1098 60 44 11 137 403 1605 2738 2824 3341 3450 3509 3288 3482 3518 3325 3537 3669 3834 3721 3483 3466 3509 3564 3524 3554 3492 3530 ]
C [ 5607 5695 5695 5663 5503 5479 5564 5783 5713 5601 5686 5577 5521 5646 5277 5670 6150 4814 6684 8051 2008 12844 147 78 18101 18153 480 3235 5593 5253 5367 5952 5476 5283 5612 5378 5497 5594 5281 5618 5464 5405 5531 5552 5498 5589 5575 5412 5646 5499 ]
G [ 5027 5037 5106 5067 5221 5111 5211 5050 5105 5279 4845 5401 5461 4781 5520 5169 4459 5921 4521 3323 4310 1436 214 80 19 10 10604 13054 3701 4505 4754 5332 5332 5368 5288 5223 5328 5184 5304 5153 5073 5194 5217 5038 5158 5137 5125 5136 5031 5166 ]
T [ 3915 3852 3797 3741 3909 3879 3810 3787 3938 3742 3994 3710 3555 3836 3726 3472 3710 3991 4901 3854 1741 3658 16721 17962 16 6 6959 1488 7281 5684 5235 3555 3922 4020 3992 4097 3837 4077 4058 3740 3809 3860 3949 4124 4015 3890 3956 4078 4011 3985 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 0.00 0.03 -0.03 0.01 -0.01 -0.04 -0.05 -0.05 -0.03 -0.02 -0.00 -0.00 0.00 ]
C [ 0.01 0.00 0.01 0.01 -0.01 0.03 -0.03 -0.02 0.08 0.09 -0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 -0.00 0.01 -0.00 -0.01 -0.03 -0.03 -0.02 0.06 0.03 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 -0.01 0.02 0.05 0.07 -0.02 -0.04 0.00 -0.00 0.02 0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1629

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 750

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 341

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 44

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 32

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 22

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000740.1 GABPA ENCSR290MUH K562 Homo sapiens MA0062.4
BP000741.1 GABPA ENCSR331HPA GM12878 Homo sapiens MA0062.4
BP000742.1 GABPA ENCSR350ORK liver Homo sapiens MA0062.4
Showing 3 profiles of page 2 from 2 pages