Detailed information of deep learning profile BP000737.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000737.1
Cell line/tissue: liver
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR038GMB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 0.07 0.05 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.03 0.05 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.09 0.07 0.00 -0.00 0.02 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 -0.00 ]

Frequency matrix

       
A [ 2166 2222 2291 2246 2256 2405 2320 2187 2201 2233 2101 2227 2158 2242 2270 2254 2223 2180 1993 2733 3041 3852 857 2828 5 21 10863 10140 2302 980 2106 2899 2012 1940 1825 2132 2321 2059 2103 2229 2112 2123 2160 2141 2188 2185 2057 2137 2118 2215 ]
C [ 3375 3327 3340 3313 3346 3319 3323 3465 3307 3217 3412 3458 3408 3566 3358 3352 3655 3557 3516 3208 2921 2474 7945 7951 5 36 57 169 972 2843 2184 2807 3935 2670 3479 3670 3191 3438 3358 3109 3309 3348 3258 3371 3303 3214 3236 3253 3136 3162 ]
G [ 3506 3534 3407 3491 3509 3366 3506 3440 3474 3475 3473 3283 3559 3322 3414 3548 3204 3354 3671 3529 3335 3705 2032 232 11039 10956 81 79 7616 1238 4978 4183 3050 4223 3441 3050 3388 3394 3563 3573 3557 3572 3583 3529 3458 3581 3698 3573 3696 3518 ]
T [ 2006 1970 2015 2003 1942 1963 1904 1961 2071 2128 2067 2085 1928 1923 2011 1899 1971 1962 1873 1583 1756 1022 219 42 4 40 52 665 163 5992 1785 1164 2056 2220 2308 2201 2153 2162 2029 2142 2075 2010 2052 2012 2104 2073 2062 2090 2103 2158 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.04 -0.03 0.07 0.05 0.02 -0.01 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.04 0.07 -0.02 -0.03 -0.03 -0.01 -0.00 0.01 -0.00 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.00 -0.02 0.09 0.07 -0.02 -0.04 0.03 -0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.05 -0.04 -0.03 -0.01 0.01 -0.03 0.03 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 788

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 778

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 547

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 245

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages