JASPAR - GABPA - BP000737.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GABPA
Model ID:	BP000737.1
Cell line/tissue:	liver
Class:	Tryptophan cluster factors
Family:	Ets-related
JASPAR ID:	MA0062.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q06546
Source:	ENCSR038GMB
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 11053

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.02	-0.00	0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.00	]
C [	0.00	0.00	-0.00	0.02	-0.00	0.00	0.07	0.09	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.05	0.03	-0.00	0.00	0.00	]
T [	0.00	0.00	-0.00	0.00	0.05	0.07	-0.00	-0.00	0.00	-0.00	0.01	0.00	-0.00	]

Frequency matrix

A [	2158	2103	2090	2062	2073	2104	2012	2052	2010	2075	2142	2029	2162	2153	2201	2308	2220	2056	1164	1785	5992	163	665	52	40	4	42	219	1022	1756	1583	1873	1962	1971	1899	2011	1923	1928	2085	2067	2128	2071	1961	1904	1963	1942	2003	2015	1970	2006	]
C [	3518	3696	3573	3698	3581	3458	3529	3583	3572	3557	3573	3563	3394	3388	3050	3441	4223	3050	4183	4978	1238	7616	79	81	10956	11039	232	2032	3705	3335	3529	3671	3354	3204	3548	3414	3322	3559	3283	3473	3475	3474	3440	3506	3366	3509	3491	3407	3534	3506	]
G [	3162	3136	3253	3236	3214	3303	3371	3258	3348	3309	3109	3358	3438	3191	3670	3479	2670	3935	2807	2184	2843	972	169	57	36	5	7951	7945	2474	2921	3208	3516	3557	3655	3352	3358	3566	3408	3458	3412	3217	3307	3465	3323	3319	3346	3313	3340	3327	3375	]
T [	2215	2118	2137	2057	2185	2188	2141	2160	2123	2112	2229	2103	2059	2321	2132	1825	1940	2012	2899	2106	980	2302	10140	10863	21	5	2828	857	3852	3041	2733	1993	2180	2223	2254	2270	2242	2158	2227	2101	2233	2201	2187	2320	2405	2256	2246	2291	2222	2166	]

Hypothetical CWM

A [	0.00	0.00	-0.00	0.00	0.03	-0.03	0.01	-0.01	-0.03	-0.04	-0.05	-0.03	-0.01	-0.00	-0.00	-0.00	]
C [	0.01	0.01	0.01	0.01	-0.01	0.03	-0.04	-0.02	0.07	0.09	-0.02	0.00	0.01	0.01	0.01	0.01	]
G [	0.00	0.01	0.01	-0.00	0.01	-0.00	-0.01	-0.03	-0.03	-0.02	0.07	0.04	-0.00	0.00	0.01	0.01	]
T [	-0.00	-0.00	0.01	0.01	-0.01	0.02	0.05	0.07	-0.03	-0.04	-0.00	-0.00	0.02	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 788

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 778

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 547

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 245

CWM

PFM

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000740.1	GABPA	ENCSR290MUH	K562	Homo sapiens	MA0062.4
BP000741.1	GABPA	ENCSR331HPA	GM12878	Homo sapiens	MA0062.4
BP000742.1	GABPA	ENCSR350ORK	liver	Homo sapiens	MA0062.4