Detailed information of deep learning profile BP000736.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000736.1
Cell line/tissue: MCF-7
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BUK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.07 0.05 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.03 0.06 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 0.00 -0.00 0.09 0.08 0.00 0.00 0.02 -0.00 0.01 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 ]

Frequency matrix

       
A [ 2698 2845 2824 2636 2624 2604 2689 2671 2786 2734 2624 2641 2595 2504 2645 2594 2654 2647 2483 2570 2773 2201 3184 3762 4330 1169 3170 5 31 12876 12145 2542 1407 2603 3093 2767 2586 2166 2321 2444 2358 2580 2739 2473 2545 2522 2429 2560 2569 2441 ]
C [ 4262 4177 4022 4148 4054 4217 4103 4116 4242 4201 4181 4090 4076 4156 4338 4334 4329 4260 4183 4509 4447 4181 3818 3657 3151 9025 9904 10 70 283 363 1623 3856 2700 3662 4665 3353 4199 4518 3991 4359 4180 3825 4143 4166 4026 4223 4145 4044 4062 ]
G [ 4249 4227 4246 4389 4472 4378 4429 4496 4277 4355 4428 4412 4394 4437 4136 4383 4278 4362 4543 4203 3975 4985 4710 4033 4789 2939 347 13487 13326 217 283 8981 1892 6147 5224 3557 4927 4556 3989 4377 4328 4390 4467 4513 4425 4553 4462 4276 4501 4654 ]
T [ 2301 2261 2418 2337 2360 2311 2289 2227 2205 2220 2277 2367 2445 2413 2391 2199 2249 2241 2301 2228 2315 2143 1798 2058 1240 377 89 8 83 134 719 364 6355 2060 1531 2521 2644 2589 2682 2698 2465 2360 2479 2381 2374 2409 2396 2529 2396 2353 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.01 -0.01 -0.06 -0.04 0.07 0.06 0.01 -0.02 0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.04 0.07 -0.02 -0.04 -0.03 -0.01 0.00 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.00 -0.02 0.09 0.08 -0.03 -0.04 0.03 -0.01 0.01 0.01 0.00 ]
T [ -0.00 -0.01 -0.01 -0.02 -0.04 -0.06 -0.06 -0.04 -0.01 0.01 -0.04 0.03 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 760

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 32

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages