Detailed information of deep learning profile BP000736.1

  1. Home
  2. Deep Learning Profile > BP000736.1
This page shows detailed deep learning-derived predictions and motifs for GABPA in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000736.1
Cell line/tissue: MCF-7
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BUK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.00 0.00 0.08 0.09 -0.00 0.00 0.01 0.00 0.01 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.03 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.05 0.07 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2353 2396 2529 2396 2409 2374 2381 2479 2360 2465 2698 2682 2589 2644 2521 1531 2060 6355 364 719 134 83 8 89 377 1240 2058 1798 2143 2315 2228 2301 2241 2249 2199 2391 2413 2445 2367 2277 2220 2205 2227 2289 2311 2360 2337 2418 2261 2301 ]
C [ 4654 4501 4276 4462 4553 4425 4513 4467 4390 4328 4377 3989 4556 4927 3557 5224 6147 1892 8981 283 217 13326 13487 347 2939 4789 4033 4710 4985 3975 4203 4543 4362 4278 4383 4136 4437 4394 4412 4428 4355 4277 4496 4429 4378 4472 4389 4246 4227 4249 ]
G [ 4062 4044 4145 4223 4026 4166 4143 3825 4180 4359 3991 4518 4199 3353 4665 3662 2700 3856 1623 363 283 70 10 9904 9025 3151 3657 3818 4181 4447 4509 4183 4260 4329 4334 4338 4156 4076 4090 4181 4201 4242 4116 4103 4217 4054 4148 4022 4177 4262 ]
T [ 2441 2569 2560 2429 2522 2545 2473 2739 2580 2358 2444 2321 2166 2586 2767 3093 2603 1407 2542 12145 12876 31 5 3170 1169 4330 3762 3184 2201 2773 2570 2483 2647 2654 2594 2645 2504 2595 2641 2624 2734 2786 2671 2689 2604 2624 2636 2824 2845 2698 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.00 0.03 -0.04 0.01 -0.01 -0.04 -0.06 -0.06 -0.04 -0.02 -0.01 -0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.01 0.03 -0.04 -0.03 0.08 0.09 -0.02 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.00 -0.01 -0.03 -0.04 -0.02 0.07 0.04 -0.00 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.01 -0.02 0.01 0.06 0.07 -0.04 -0.06 -0.01 -0.01 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 760

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 32

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages