JASPAR - GABPA - BP000736.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GABPA
Model ID:	BP000736.1
Cell line/tissue:	MCF-7
Class:	Tryptophan cluster factors
Family:	Ets-related
JASPAR ID:	MA0062.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q06546
Source:	ENCSR000BUK
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 13510

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.02	-0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	]
C [	0.00	0.01	-0.00	0.02	0.00	0.00	0.08	0.09	-0.00	0.00	0.01	0.00	0.01	0.00	]
G [	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.06	0.03	-0.00	0.00	0.00	0.00	]
T [	0.00	0.00	-0.00	0.00	0.05	0.07	-0.00	-0.00	-0.00	-0.00	0.01	0.00	-0.00	-0.00	]

Frequency matrix

A [	2353	2396	2529	2396	2409	2374	2381	2479	2360	2465	2698	2682	2589	2644	2521	1531	2060	6355	364	719	134	83	8	89	377	1240	2058	1798	2143	2315	2228	2301	2241	2249	2199	2391	2413	2445	2367	2277	2220	2205	2227	2289	2311	2360	2337	2418	2261	2301	]
C [	4654	4501	4276	4462	4553	4425	4513	4467	4390	4328	4377	3989	4556	4927	3557	5224	6147	1892	8981	283	217	13326	13487	347	2939	4789	4033	4710	4985	3975	4203	4543	4362	4278	4383	4136	4437	4394	4412	4428	4355	4277	4496	4429	4378	4472	4389	4246	4227	4249	]
G [	4062	4044	4145	4223	4026	4166	4143	3825	4180	4359	3991	4518	4199	3353	4665	3662	2700	3856	1623	363	283	70	10	9904	9025	3151	3657	3818	4181	4447	4509	4183	4260	4329	4334	4338	4156	4076	4090	4181	4201	4242	4116	4103	4217	4054	4148	4022	4177	4262	]
T [	2441	2569	2560	2429	2522	2545	2473	2739	2580	2358	2444	2321	2166	2586	2767	3093	2603	1407	2542	12145	12876	31	5	3170	1169	4330	3762	3184	2201	2773	2570	2483	2647	2654	2594	2645	2504	2595	2641	2624	2734	2786	2671	2689	2604	2624	2636	2824	2845	2698	]

Hypothetical CWM

A [	0.00	-0.01	-0.00	0.03	-0.04	0.01	-0.01	-0.04	-0.06	-0.06	-0.04	-0.02	-0.01	-0.01	-0.00	]
C [	0.00	0.01	0.01	-0.01	0.03	-0.04	-0.03	0.08	0.09	-0.02	0.00	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	-0.00	0.01	0.00	-0.01	-0.03	-0.04	-0.02	0.07	0.04	-0.00	0.01	0.01	0.01	]
T [	-0.00	0.00	0.01	-0.02	0.01	0.06	0.07	-0.04	-0.06	-0.01	-0.01	0.01	0.00	-0.01	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 760

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 113

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 104

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 32

CWM

PFM

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000740.1	GABPA	ENCSR290MUH	K562	Homo sapiens	MA0062.4
BP000741.1	GABPA	ENCSR331HPA	GM12878	Homo sapiens	MA0062.4
BP000742.1	GABPA	ENCSR350ORK	liver	Homo sapiens	MA0062.4