Detailed information of deep learning profile BP000735.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in HL-60 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000735.1
Cell line/tissue: HL-60
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BTK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.06 0.04 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.09 0.08 0.00 -0.00 0.02 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.02 0.00 -0.00 ]

Frequency matrix

       
A [ 2412 2500 2438 2482 2441 2586 2435 2399 2358 2366 2342 2376 2285 2470 2344 2316 2360 2512 2147 3222 3593 4616 1239 3881 4 15 10656 9984 1731 746 2289 2817 1996 2173 2071 2335 2399 2128 2241 2447 2301 2361 2294 2344 2282 2281 2204 2276 2206 2295 ]
C [ 3062 3025 2995 2933 3044 2935 3091 3059 3031 2960 3007 3192 3121 3140 3030 3073 3387 3237 3120 2877 2811 1812 6615 6375 1 18 33 153 1195 2680 1870 2454 3668 2454 3042 3254 2981 3217 3103 2847 3000 2989 3054 3096 3117 3062 2988 3045 3017 3005 ]
G [ 3235 3306 3328 3375 3282 3185 3244 3282 3183 3259 3268 2997 3350 3156 3246 3365 3031 2939 3766 3278 2931 3421 2684 494 10751 10709 45 80 7749 1035 4653 4112 2663 3638 3269 2917 3160 3257 3478 3356 3492 3468 3306 3233 3212 3255 3374 3366 3470 3314 ]
T [ 2047 1925 1995 1966 1989 2050 1986 2016 2184 2171 2139 2191 2000 1990 2136 2002 1978 2068 1723 1379 1421 907 218 6 0 14 22 539 81 6295 1944 1373 2429 2491 2374 2250 2216 2154 1934 2106 1963 1938 2102 2083 2145 2158 2190 2069 2063 2142 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 0.01 -0.00 0.00 -0.04 -0.04 0.07 0.05 0.01 -0.02 0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.03 0.06 -0.02 -0.02 -0.03 -0.00 0.01 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.01 -0.00 0.09 0.08 -0.02 -0.03 0.03 -0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.01 -0.01 -0.01 -0.03 -0.07 -0.06 -0.04 -0.02 0.00 -0.04 0.02 0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 779

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 259

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 64

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages