JASPAR - GABPA - BP000735.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in HL-60 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GABPA
Model ID:	BP000735.1
Cell line/tissue:	HL-60
Class:	Tryptophan cluster factors
Family:	Ets-related
JASPAR ID:	MA0062.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q06546
Source:	ENCSR000BTK
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 10756

Contribution weight matrix (CWM)

A [	-0.00	0.00	0.02	-0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	-0.00	0.02	-0.00	0.00	0.08	0.09	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.02	-0.00	0.00	0.00	]
T [	0.00	0.00	-0.00	0.00	0.04	0.06	0.00	0.00	0.00	0.00	0.01	0.00	0.00	]

Frequency matrix

A [	2142	2063	2069	2190	2158	2145	2083	2102	1938	1963	2106	1934	2154	2216	2250	2374	2491	2429	1373	1944	6295	81	539	22	14	0	6	218	907	1421	1379	1723	2068	1978	2002	2136	1990	2000	2191	2139	2171	2184	2016	1986	2050	1989	1966	1995	1925	2047	]
C [	3314	3470	3366	3374	3255	3212	3233	3306	3468	3492	3356	3478	3257	3160	2917	3269	3638	2663	4112	4653	1035	7749	80	45	10709	10751	494	2684	3421	2931	3278	3766	2939	3031	3365	3246	3156	3350	2997	3268	3259	3183	3282	3244	3185	3282	3375	3328	3306	3235	]
G [	3005	3017	3045	2988	3062	3117	3096	3054	2989	3000	2847	3103	3217	2981	3254	3042	2454	3668	2454	1870	2680	1195	153	33	18	1	6375	6615	1812	2811	2877	3120	3237	3387	3073	3030	3140	3121	3192	3007	2960	3031	3059	3091	2935	3044	2933	2995	3025	3062	]
T [	2295	2206	2276	2204	2281	2282	2344	2294	2361	2301	2447	2241	2128	2399	2335	2071	2173	1996	2817	2289	746	1731	9984	10656	15	4	3881	1239	4616	3593	3222	2147	2512	2360	2316	2344	2470	2285	2376	2342	2366	2358	2399	2435	2586	2441	2482	2438	2500	2412	]

Hypothetical CWM

A [	0.01	-0.00	0.00	0.02	-0.04	0.00	-0.02	-0.04	-0.06	-0.07	-0.03	-0.01	-0.01	-0.01	-0.00	]
C [	0.00	0.01	0.01	-0.00	0.03	-0.03	-0.02	0.08	0.09	-0.00	0.01	0.01	0.00	0.01	0.01	]
G [	0.01	0.01	-0.00	0.01	0.01	-0.00	-0.03	-0.02	-0.02	0.06	0.03	-0.00	0.01	0.01	0.01	]
T [	-0.00	0.00	0.01	-0.02	0.01	0.05	0.07	-0.04	-0.04	0.00	-0.00	0.01	0.00	-0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 779

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 259

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 64

CWM

PFM

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000740.1	GABPA	ENCSR290MUH	K562	Homo sapiens	MA0062.4
BP000741.1	GABPA	ENCSR331HPA	GM12878	Homo sapiens	MA0062.4
BP000742.1	GABPA	ENCSR350ORK	liver	Homo sapiens	MA0062.4