Detailed information of deep learning profile BP000733.1

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This page shows detailed deep learning-derived predictions and motifs for GABPA in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000733.1
Cell line/tissue: A549
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BPY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.00 0.00 0.07 0.09 0.00 0.00 0.00 0.00 0.01 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.03 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.05 0.07 -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 2448 2429 2566 2413 2412 2301 2339 2467 2279 2446 2720 2690 2746 2783 2447 1543 2042 6306 482 679 168 105 4 65 374 1305 2040 1769 2213 2318 2290 2351 2273 2301 2154 2325 2374 2455 2399 2272 2273 2309 2298 2299 2341 2352 2317 2442 2287 2327 ]
C [ 4490 4378 4154 4414 4495 4491 4478 4451 4405 4155 4218 3869 4422 4805 3441 5071 6004 1819 8750 276 363 13106 13358 321 3042 4743 3987 4725 4727 4116 4095 4447 4384 4124 4382 4147 4441 4329 4325 4363 4247 4171 4384 4336 4373 4398 4307 4250 4164 4185 ]
G [ 4072 4012 4131 4108 3905 4007 4046 3825 4174 4360 3991 4440 4068 3219 4668 3435 2626 3817 1591 414 302 123 7 10238 8827 3143 3744 3738 4165 4292 4415 4090 4139 4365 4190 4278 4090 3932 4050 4150 4118 4110 4106 4082 3978 3946 4160 3964 4125 4167 ]
T [ 2362 2553 2521 2437 2560 2573 2509 2629 2514 2411 2443 2373 2136 2565 2816 3323 2700 1430 2549 12003 12539 38 3 2748 1129 4181 3601 3140 2267 2646 2572 2484 2576 2582 2646 2622 2467 2656 2598 2587 2734 2782 2584 2655 2680 2676 2588 2716 2796 2693 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.02 -0.03 0.01 -0.01 -0.03 -0.06 -0.06 -0.04 -0.02 -0.01 -0.01 -0.00 ]
C [ 0.01 0.01 -0.01 0.03 -0.04 -0.02 0.07 0.09 -0.01 0.01 0.01 0.00 0.01 0.01 ]
G [ 0.00 -0.00 0.01 -0.00 -0.01 -0.03 -0.03 -0.02 0.07 0.03 -0.00 0.01 0.01 0.01 ]
T [ 0.00 0.00 -0.01 0.01 0.05 0.07 -0.04 -0.05 -0.01 -0.01 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3523

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 749

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 619

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 144

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000729.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens MA0062.4
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages